Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241850g00006 ATGCCACGGGAAAAGGAAATTTCTTCACCAGTTGCTAAGCCATCTGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCAGTTTTGATGACGCAAATGATGCTGAGGAAACGATGGCAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTGGAGGAAGAAGAAGAAGAGGAAGAGGATCCAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTGGAAGAAGTTGAAGAAGAAGAAGATAATACTAATAGCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGCGGTATTCCACTTGATGCCTCGACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAATTACAGAGGTTCGTGTAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGCTTTGGCTTTGTGACATTTAAAAATGCAGAATTGGCTTCTAAAGCTATCAAGGAGCTGAACAATAAAGTGTTTAGGGGTAGAAAAATAAAATGTTCAACAGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTTTATCTGATGTTTCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGCGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACTGTGAGCTGGGCTGACCCTAGAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTGCCTAAGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGACAGGAAAAGAACAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGGACTGCTCTCTAGCAAAGCCACAGGCTGATCAGAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGGTTGCTTCCAAGCTATACCCCACATGTTGGTTACGGTTTGGTTGGGGGTGCCTATGGTGCCCTTGGCACGGGATATGGTGTTGCAGGTCTTGCACAGATGCCCTTGATGTATGGAACGGGTGCTCCTGCTGGAATTTCCATGATGCCTATGCTTTTGGCCGATGGTCGAGTTGGATATGTCTTGCAACAACCTGGTCAAGGAGTGGCCCCACAAACACCACCCTCCTATCAAAGAGGTGGCAGGGGTGGTGGTGGTGGGAGTAGCAGCAGGAATGCCAGCAGTTCAAGTAAAGGAAGGCACAACAATAATAGTGGCCAAGGGCATAGATACCGCCCCTATTAG 1539 0.4314 MPREKEISSPVAKPSEPENPAESDEKISFDDANDAEETMAEEIEYEEVEEEEEEEEEEEEEEEEEEEEEEEVEEEEEEEEDPEEEEEEEEEEVEEVEEEEDNTNSMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGGIPLDASTEDLKAFCESIGEITEVRVMKGKDSSENKGFGFVTFKNAELASKAIKELNNKVFRGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVLSDVSPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPRNADSSASSQVKAVYVKNLPKNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILDCSLAKPQADQKSGGSNLQKPGLLPSYTPHVGYGLVGGAYGALGTGYGVAGLAQMPLMYGTGAPAGISMMPMLLADGRVGYVLQQPGQGVAPQTPPSYQRGGRGGGGGSSSRNASSSSKGRHNNNSGQGHRYRPY 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241850g00006 512 MobiDBLite consensus disorder prediction 462 512 - -
Stsc241850g00006 512 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 213 293 - -
Stsc241850g00006 512 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 506 - -
Stsc241850g00006 512 SMART rrm2_1 307 380 IPR003954 GO:0003676
Stsc241850g00006 512 SMART rrm2_1 133 206 IPR003954 GO:0003676
Stsc241850g00006 512 MobiDBLite consensus disorder prediction 29 102 - -
Stsc241850g00006 512 MobiDBLite consensus disorder prediction 110 126 - -
Stsc241850g00006 512 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 295 403 - -
Stsc241850g00006 512 Gene3D - 294 400 IPR012677 -
Stsc241850g00006 512 SMART rrm1_1 307 380 IPR000504 GO:0003723
Stsc241850g00006 512 SMART rrm1_1 133 206 IPR000504 GO:0003723
Stsc241850g00006 512 SMART rrm1_1 213 290 IPR000504 GO:0003723
Stsc241850g00006 512 Coils Coil 35 106 - -
Stsc241850g00006 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 294 IPR000504 GO:0003723
Stsc241850g00006 512 MobiDBLite consensus disorder prediction 1 132 - -
Stsc241850g00006 512 SUPERFAMILY RNA-binding domain, RBD 301 398 IPR035979 GO:0003676
Stsc241850g00006 512 CDD RRM_SF 134 206 - -
Stsc241850g00006 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Stsc241850g00006 512 SUPERFAMILY RNA-binding domain, RBD 129 297 IPR035979 GO:0003676
Stsc241850g00006 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Stsc241850g00006 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Stsc241850g00006 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 375 IPR000504 GO:0003723
Stsc241850g00006 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 280 IPR000504 GO:0003723
Stsc241850g00006 512 Gene3D - 213 293 IPR012677 -
Stsc241850g00006 512 MobiDBLite consensus disorder prediction 481 512 - -
Stsc241850g00006 512 Gene3D - 13 212 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241850g00006 Stsc-Chr241850 25849 30454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241850g00006 154 484 Eukaryotic Initiation Factors Gene Family AT4G34110 26.158 1.45e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241850g00006 K13161 - gmx:100806658 612.453