Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241848g00010 ATGGATGAATTACAACATAGAAAGATCTATGTTCTTGTTCATGATGTGGTGATTTTGTTGGTGATGGTGGTGCTGGTGGGATCAAGTTGTGTTAAAGGAGGAGGAGGAGGAGAAGAAGAAGATAGGATCTTGGAACTTCCTGGACAACCAAAGGTGTCTTTTCAGCAGTTTTCAGGCTATGTTACTGTCAACAAGGTTGCTGGCAGAGCACTCTTCTACTGGCTCACTGAAGCTTCTCAAAACTCACTCAGAAAACCCCTTGTCATTTGGCTCAATGGAGGTCCCGGTTGTTCTTCAGTAGCATATGGAGCATCTGAAGAGATTGGCCCTTTTAGAGTAAACAGGACTGCTTCAGGGTTATACATTAACAAGTTTTCATGGAACACAGTGGCCAACCTCTTATTCCTGGAAACTCCGGCCGGCGTCGGGTTCTCGTACACCAACCGCTCCTCCGACCTGCATGACACCGGAGACCGCCGCACCGCGAAAGACTCTCTGGAATTTGTAGTGCAATGGCTAGAAAGGTTCCCTCGCTATAAGAATCGGGAGCTTTATATAACTGGAGAGAGCTATGCTGGCCATTATGTCCCTCAATTAGCTCGAGAAATTATGACTTATAACACCAACAACAACAAGAACCCCATCAATCTCAAAGGAATAATGGTTGGTAATGCAGTAACAGACAACTATTATGACAACTTAGGAACAGTGACATATTGGTGGAGCCATGCAATGATATCTGACCAGACTTACAGGCAACTCATTAGCACTTGTGACTTCCACAGGCAGAAGGAATCTGATGAGTGCGAGTCTCTCTATAGTTATGCCATGGATCAAGAATTCGGAAACATTGACCAATACAACATCTATGCACCTCCCTGCAACAACTCCGATGGCAGCGCCGCCACCTCCCGCCGCTCAATGCGCCTACCCCATCGCCCCCATCATCCGGCAGTTAGGCAATTGTCTGGGTATGATCCATGTACTGAAAAGTATGCAGAGATATACTACAATAGGCCAGATGTTCAGAAAGCACTTCATGCTAACACTACTGGTATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCGGTTCTACCAATTTATAGAGAGTTGATGGCTAACGGAATAAGAGTTTGGGTGTTCAGTGGAGACGTAGATTCGGTGGTGCCGGTTACAGCAACTAGATATGCACTTGCACAGCTTAAGGTGGCAACTAAAATACCATGGTATCCATGGTATGTCAAAAATCAGGTTGGAGGTTGGACTGAAGTATATGAAGGGCTAACATTTGCCACAGTGAGAGGAGCAGGCCATGAAGTTCCATTATTCAAGCCAAGAGCAGCTCTTCAGTTATTCAAATCATTCCTTTCTGGAAAGCCTCTCCCTAAGTCCTAA 1428 0.4531 MDELQHRKIYVLVHDVVILLVMVVLVGSSCVKGGGGGEEEDRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEASQNSLRKPLVIWLNGGPGCSSVAYGASEEIGPFRVNRTASGLYINKFSWNTVANLLFLETPAGVGFSYTNRSSDLHDTGDRRTAKDSLEFVVQWLERFPRYKNRELYITGESYAGHYVPQLAREIMTYNTNNNKNPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLISTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSAATSRRSMRLPHRPHHPAVRQLSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSVLPIYRELMANGIRVWVFSGDVDSVVPVTATRYALAQLKVATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLSGKPLPKS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241848g00010 475 Gene3D - 375 469 - -
Stsc241848g00010 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 FunFam Carboxypeptidase 375 469 - -
Stsc241848g00010 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 456 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 FunFam Carboxypeptidase 37 296 - -
Stsc241848g00010 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Stsc241848g00010 475 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Stsc241848g00010 475 Pfam Serine carboxypeptidase 48 469 IPR001563 GO:0004185|GO:0006508
Stsc241848g00010 475 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Stsc241848g00010 475 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Stsc241848g00010 475 SUPERFAMILY alpha/beta-Hydrolases 45 473 IPR029058 -
Stsc241848g00010 475 Gene3D - 328 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241848g00010 Stsc-Chr241848 57677 64312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241848g00010 333 472 Calmodulin-binding Proteins AT2G22960 32.624 2.24e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241848g00010 K16297 - gmx:100807680 824.698