Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241848g00005 ATGGCGTTCTTCAATAGAATGGGGAGCCTACTGAAGCAATCTGCTGTCAGGCACATGAATCAAGAGTTGTCTGGATCGACTCCTTCGATTTTTCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATTGGAGGTATTTCATATAGCACAGATGAGATGAGTCTGCGTGAGGCTTTTGCACGTTATGGAGAAGTAGTTGATGCAAGGGTTATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGCTTCATAACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGAGGATACGCGTGAACTTTGCTACAGAAAGACAACGTCCAGGATTTGGTGGCGGCGGAGGCTATGGCGGCGCTGGTGGATATGGGGGTGGTGGCTATGGCGGCGGCGGCGGCTATGGCGGTGGCGGCGGATATGGTGGTGGGGGCTATGGCGGTGGTAATGCTAATAGTGGTGGAGGTTATGGAGGCGGTGGATATGGTGCCCCTGCCAGCTATGGTGGTGGCAATGCTGAAACTAGTTTCGCAGATAGCGGTGCTAGTAATTACCAATTCAATGATAATTCTGGCGGAGATCTCCCCTCTGGTGGTGGCAATACGGGTATGGGAGATGATCTTGAGTTTGATGAACCTAAGGACAGAACAGATGGTGAGTTTCAAGACGACAATCTGAGAGAAAACAATGATGAACCCAATGATATTGCACAGAACCGCGGCTGA 762 0.4961 MAFFNRMGSLLKQSAVRHMNQELSGSTPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNFATERQRPGFGGGGGYGGAGGYGGGGYGGGGGYGGGGGYGGGGYGGGNANSGGGYGGGGYGAPASYGGGNAETSFADSGASNYQFNDNSGGDLPSGGGNTGMGDDLEFDEPKDRTDGEFQDDNLRENNDEPNDIAQNRG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241848g00005 253 Gene3D - 9 137 IPR012677 -
Stsc241848g00005 253 MobiDBLite consensus disorder prediction 219 247 - -
Stsc241848g00005 253 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 145 - -
Stsc241848g00005 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Stsc241848g00005 253 SMART rrm1_1 41 114 IPR000504 GO:0003723
Stsc241848g00005 253 MobiDBLite consensus disorder prediction 192 209 - -
Stsc241848g00005 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Stsc241848g00005 253 SUPERFAMILY RNA-binding domain, RBD 27 150 IPR035979 GO:0003676
Stsc241848g00005 253 MobiDBLite consensus disorder prediction 192 253 - -
Stsc241848g00005 253 CDD RRM2_NsCP33_like 41 116 - -
Stsc241848g00005 253 PRINTS Eggshell protein signature 162 172 - -
Stsc241848g00005 253 PRINTS Eggshell protein signature 210 228 - -
Stsc241848g00005 253 PRINTS Eggshell protein signature 36 52 - -
Stsc241848g00005 253 PRINTS Eggshell protein signature 131 146 - -
Stsc241848g00005 253 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241848g00005 Stsc-Chr241848 15987 18635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241848g00005 42 126 Eukaryotic Initiation Factors Gene Family AT3G16380 29.070 1.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241848g00005 K12741 - gmx:100807155 259.61