Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241847g00002 ATGGATCGTCCATTCATTCTCTTTATGATTGGAGCCATGTTTGTGTTTTCATCATCATCATCATCATCAGAAGGTGCTACTACAACTACCAACACTAACCAGTCTGAGTTTTTCACTATATTGAAAAAGTCTCTTTTGGGAAACTTCCCTGTTAACTGGAATAATACTAACCAAGGCTTCTGCAAGTTCAGTGGAGTCACATGCAACGACCAAGGTGACGTCACCGTTCTCGACTTCACCGGCTGGTCATCACTCTCCGGAAACTTCCCCTCTTGGCTATGCAACTACCTGCCAAACTTACAGGTCCTTCGAATGGGTTTTACCAAGTTCAAGTTCCCAACAGAATCCATAACAAACTGCTCCAACTTGCAAGAACTCAACATGAACCACATGTTCCTATCAGCAACACTCCCTGACTTCTCGCCATTGCAGAACCTCAGAGTCCTTGACTTGTCCTATAACCTCTTCACCGGAGACTTCCCCATGTCCGTCTTCAACCTCTCCAATCTCGAGATTATCAACTTCAACGAGAACACAGCCTTCCGTGGCTGGAAGCTTCCGGAAACCTTTGACAACTTCAAGAAGCTCAACTCCATGGTTCTAACAACTTGCTCTTTGCATGNNNNNNNNNNAGCTTTAGGGAATATAACAACGCTCGTTGATCTTGAACTCAGTGGAAACTACCTCACCGGACAAATTCCCAGGGAGCTTGGGCTTCTTAAGAATCTTCAAGAGCTTGAACTTTACTACAACTACCACCTCGTTGGAAACATACCTGAAGAGCTCGGGAATCTATCGGAGCTAACGGATTTGGACATGTCCGTTAACAAGTTAACCGGAAGAATCCCTGTTTCCATTTGTAAGCTTCCAAAGCTTCAAGTTCTTCAGCTCTACAACAACAGCCTTGTTGGAGAGATACCAGGTGAGTTAGAGAATTCAACTGCGTTGAGGATCTTGTCGCTTTACGACAACTTCCTGAACGGTACGGTGCCGGAAAAGCTAGGACAATTCTCCGGCATGGCGGTTCTGGACTTGTCAGAGAACAGTCTCTCCGGTCCGTTGCCGAGGGAGGTTTGCAAGGGAGGTAAGCTGTTATACTTTCTTGTACTGGATAACAACTTCTCTGGCGTGATACCTGACAGTTACGCTAGCTGCATGATGCTGTTACGCTTCCGCGTGAGTAACAATCGGTTACAGGGCCCCATTCCCGAGGGCCTCCTAAGCTTGCCACACGTGTCAATCGTTGATTTGAGCAGCAACAACCTCAGCGGCGTGATTCCCGATATTAACGGTAATTCAAGAAACCTCTCTGAGCTCTTCCTACAGAGGAACATGATCTCCGGCGTGATACCGTCGTCCATCGCACGCGCTCCAAACCTCGTGAAGATTGATTTCAGCAGTAACCGTCTCTCCGGTGCTATTCCTCCCGAAATCGGAAACCTGAGGAAGCTGAATTTGCTTATGCTGCAAGGGAACAAATTGAGTGACTCCATTCCCAGTTCTCTTTCTTCTCTTTCATCTCTCAACCTTCTAGATCTTTCTAACAACCTTCTCACGGGTTCCATCCCGGAGAGCCTCTCTGTTTTATTGCCCAACTCTATTAATTTCTCACACAATCTTCTCTCCGGTCCCATTCCTCCCAAACTCATCAAAGGAGGATTGGTAGAAAGCTTTTCCGGGAACCCTGGATTGTGCGTTCTTCCATCTTCTAACTCTTCTGATGATCAGAGCTTCCCTCTCTGCAACTCACGCGAGTACAAGAGCAAGAAACTCAACACTATTTGGGTGGCTGGGATCTCTGTCGTCTTGATCTTCGTTGGTGCCATGCTGTTCTTGAAACGCAGGTGCAGTAAAGAAACAGCTGCTGTTGAACACGACGAGATGCTTTCTTCGTCGTTCTTCTCTTACGACGTGAAGAGCTTCCATAGAATTACTTTTGATCAGAGAGAGATAATTGAGTCGTTGGTGGACAAGAACATAATGGGGCACGGAGGGTCAGGGACGGTGTACAGAATAGAGCTAAAAAGCGGCGATGTTATCGCAGTTAAGAGGCTGTGGAGCACGAAATCGAAAGACGATTCGGGTGCGGCGGAGGACCGGTTAGTTGTGGACAGAGCATTGAAGGCGGAGGTGGAGACATTAGGGAGCATAAGGCACAAGAACATAGTGAAACTTTATTGTTGCTTCTCTAGTATGGATTGTAGCTTGCTTGTTTATGAATACATGCCTAATGGGAACTTGTGGGACGCTCTTCACAAAGGCTGCATTCAATTGGATTGGCCTACACGCTACCAGATTGCTCTTGGGATTGCTCAGGGTCTCGCTTACCTTCACCATGATTTGGTTTTTCCTGTCATTCATAGAGATATCAAGTCCACTAACATACTCTTGGATGTTGATAATCACCCTAAGGTTGCAGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAGGAGCCAAAGATTCCACCACTACTGTTATTGCTGGAACTTACGGTTACTTAGCCCCAGAATATGCATATTCACCAAGGGCCACTACAAAGTGTGATGTGTACAGTTTTGGTGTGATTCTAATGGAGCTTCTGACTGGTAGAAAGCCAGTGGAGGCTGAATTTGGAGAGAACAGGAACATAGTGTTTTGGGTATCAAACAAAGTTGAAGGCAAAGAAGGTGCAAGACCAAGTGAAGTTTTTGATCCAAGATTATCAAATTCATTCATAGATGACATGATTAAGGTCCTTAGGATTGCAATTAGGTGCACCTACAAAGCACCATCTAGTAGACCAACTATGAAGGAGGTTGTTGAGCTTCTCATTGAAGCAGAGCCATGCAAGTTAGCATCAAATAATGTCACCATAATAAAGAAACCGTTTGAAGTATAA 2880 0.4535 MDRPFILFMIGAMFVFSSSSSSSEGATTTTNTNQSEFFTILKKSLLGNFPVNWNNTNQGFCKFSGVTCNDQGDVTVLDFTGWSSLSGNFPSWLCNYLPNLQVLRMGFTKFKFPTESITNCSNLQELNMNHMFLSATLPDFSPLQNLRVLDLSYNLFTGDFPMSVFNLSNLEIINFNENTAFRGWKLPETFDNFKKLNSMVLTTCSLHXXXXALGNITTLVDLELSGNYLTGQIPRELGLLKNLQELELYYNYHLVGNIPEELGNLSELTDLDMSVNKLTGRIPVSICKLPKLQVLQLYNNSLVGEIPGELENSTALRILSLYDNFLNGTVPEKLGQFSGMAVLDLSENSLSGPLPREVCKGGKLLYFLVLDNNFSGVIPDSYASCMMLLRFRVSNNRLQGPIPEGLLSLPHVSIVDLSSNNLSGVIPDINGNSRNLSELFLQRNMISGVIPSSIARAPNLVKIDFSSNRLSGAIPPEIGNLRKLNLLMLQGNKLSDSIPSSLSSLSSLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFSGNPGLCVLPSSNSSDDQSFPLCNSREYKSKKLNTIWVAGISVVLIFVGAMLFLKRRCSKETAAVEHDEMLSSSFFSYDVKSFHRITFDQREIIESLVDKNIMGHGGSGTVYRIELKSGDVIAVKRLWSTKSKDDSGAAEDRLVVDRALKAEVETLGSIRHKNIVKLYCCFSSMDCSLLVYEYMPNGNLWDALHKGCIQLDWPTRYQIALGIAQGLAYLHHDLVFPVIHRDIKSTNILLDVDNHPKVADFGIAKVLQARGAKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSNSFIDDMIKVLRIAIRCTYKAPSSRPTMKEVVELLIEAEPCKLASNNVTIIKKPFEV 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241847g00002 959 Pfam Leucine rich repeat 434 494 IPR001611 GO:0005515
Stsc241847g00002 959 FunFam receptor protein-tyrosine kinase CEPR1 638 741 - -
Stsc241847g00002 959 SUPERFAMILY L domain-like 187 427 - -
Stsc241847g00002 959 Gene3D Ribonuclease Inhibitor 308 576 IPR032675 -
Stsc241847g00002 959 SUPERFAMILY Protein kinase-like (PK-like) 642 937 IPR011009 -
Stsc241847g00002 959 Pfam Protein kinase domain 657 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241847g00002 959 SMART LRR_typ_2 505 529 IPR003591 -
Stsc241847g00002 959 SMART LRR_typ_2 289 313 IPR003591 -
Stsc241847g00002 959 SMART LRR_typ_2 481 504 IPR003591 -
Stsc241847g00002 959 SMART LRR_typ_2 143 167 IPR003591 -
Stsc241847g00002 959 SMART LRR_typ_2 409 432 IPR003591 -
Stsc241847g00002 959 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 185 938 - -
Stsc241847g00002 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Stsc241847g00002 959 SMART serkin_6 655 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241847g00002 959 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 742 955 - -
Stsc241847g00002 959 SUPERFAMILY L domain-like 371 567 - -
Stsc241847g00002 959 FunFam Leucine-rich repeat receptor protein kinase EMS1 210 289 - -
Stsc241847g00002 959 Gene3D Transferase(Phosphotransferase) domain 1 742 952 - -
Stsc241847g00002 959 FunFam Receptor protein-tyrosine kinase CEPR1 290 574 - -
Stsc241847g00002 959 Gene3D Phosphorylase Kinase; domain 1 638 741 - -
Stsc241847g00002 959 Pfam Leucine rich repeat N-terminal domain 41 69 IPR013210 -
Stsc241847g00002 959 ProSiteProfiles Protein kinase domain profile. 655 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241847g00002 959 SUPERFAMILY L domain-like 46 251 - -
Stsc241847g00002 959 Gene3D Ribonuclease Inhibitor 33 307 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241847g00002 Stsc-Chr241847 15452 19379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241847g00002 30 942 Receptor kinase-like Gene Family AT5G49660 63.152 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241847g00002 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241847g00002 - - gmx:100785822 1431