LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241847g00001	ATGCTTTCGGGTCCGATTCCACCTGACATGTGCAAGAAGGGGAAAATGACTGCTCTGTTACTGCTTCAGAACAAGCTCACGGGAGCAATACCGGAAACCTACGCTTCCTGTAACAGTCTTAAACGTTTTAGAGTCAGCAACAACTCCCTCTCCGGTTCCGTACCGGTTGGACTCTGGGGACTTCCAAACGCTGAAATCATAGATATTGAACTCAACAATCTAGAAGGTTCGGTTACCTCTGAAATCAAGAGCGCGAAGAATCTGGCTCAGATATACGCCCGGAAGAACCGGTTATCCGGTGAGATGCCAAAGGAGATTTCTGAAGCGAGTTCGTTAGTCACTATTGATCTCAGCGGGAATCAAATTTCCGGTGAAATTCCAGATTCAATTGGCGGATTGAAACAACTCGGAAGCCTTTATTTACAGAAGAATCAGTTAACTGGATCGATACCTGAGTCTTTAGGTTCTTGCATTTCGCTGAACGACGTTGATTTATCGATGAACTCGCTCTCCGGCAAGATTCCTTCTTCGTTGGGATCTCTACCGGCTCTGAACTCGCTTAACATGTCAAGGAACCGATTGTCCGGCGAGATTCCGTCGAGTTTGGCGTTGCTGAGATTGAGCCTCTTTGATTTATCGGAGAATAAGTTGAGCGGGGAAATTCCTCAGGCTCTTACGATTCAAGCTTACAATGGCAGCCTCGCCGGAAACCCTGGACTCTGCAGCGTCGACTTGATCGGTTCATTCCCTCGGTGCTCGAAGGGTTCCGGCATGTCAAAAGGAGTTCGCACCATTGTGGTTTGCATTCCAATTTTGTTGGTTTTGGTTATGCTCTGTTTGGCGCTTTACTTGAAAAAGAAGAACAAGAAAGTGAATTATGGTGGAGGAGGGCGTTCTCTTAAAGAAGAGTATTCATGGGACGTGAAATCCTTCCATGTTCTAAGCTTCACAGAAGACGAGATTCTTGATTCCATCAAGCAAGAGAATCTGATTGGAAAAGGAGGTTCAGGGAATGTTTTCAGGGTTACATTGTCCAATGGGAAAGAGCTCGCTGTCAAGCATATATGGAACACCGATATCGATTCGAGGACGAAGAAGTCCAGATCCTGGAGCAGTGGTAGTGGTAGCGGAACACCGATGCTCGCCGGAAAGCGCACCGGGAAGTCCAAGGAGTTTGATGCAGAGGTGCAGGCATTGAGCTCCATAAGGCATGTGAATGTGGTGAAGCTGTATTGTAGCATAACAAGCGAGGATTCGAATCTTTTGGTTTATGAGTACTTGCCTAATGGAAGCTTGTGGGATAGGCTTCACACCAGAGGAAAGATGGAGCTTGATTGGGAGACAAGGTATGAGATTGCCGTGGGTGCCGCCAAGGGATTGGAGTACTTACATCATTCATGTGAGAGGCCTGTTATTCATAGGGATGTTAAGTCCAGTAACATCTTGCTTGATGAGTTCTTGAAGCCTCGGATTGCGGATTTTGGTTTGGCTAAGATTGTTCAAGCTAATGTTGCAAAGGATTCTACTCATGTTATTGCAGGAACACACGGTTACATTGCTCCTGAATATGGCTACACTTACAAGGTTAATGAGAAGAGTGATGTGTACAGTTTTGGGGTTGTGTTGATGGAGTTAGTGACAGGTAAAAAACCAATTGAAGCAGAATTTGGTGAAAATAAGGACATAGTAAGTTGGGTCCATAGCAAAGCACAGAACAAAGAAATGTTTGGGAGTGTTGTGGACTCAAGAATCCCAGAAATGTATAAGGAAGAAGCTTGCAAGGTGCTAAGAACTGCAGTTCTATGCACAGCAACTCTTCCAGCTATGAGGCCTACTATGAGGGCAGTGGTTCAGATGCTTGAAGATGCTGAGCCTTGTAAATTGGTTGGAATTGTTATAAGCAAAGATGGCAGCCAAAAGAAAATCACAGCCAATGCCAAATAG	1944	0.4537	MLSGPIPPDMCKKGKMTALLLLQNKLTGAIPETYASCNSLKRFRVSNNSLSGSVPVGLWGLPNAEIIDIELNNLEGSVTSEIKSAKNLAQIYARKNRLSGEMPKEISEASSLVTIDLSGNQISGEIPDSIGGLKQLGSLYLQKNQLTGSIPESLGSCISLNDVDLSMNSLSGKIPSSLGSLPALNSLNMSRNRLSGEIPSSLALLRLSLFDLSENKLSGEIPQALTIQAYNGSLAGNPGLCSVDLIGSFPRCSKGSGMSKGVRTIVVCIPILLVLVMLCLALYLKKKNKKVNYGGGGRSLKEEYSWDVKSFHVLSFTEDEILDSIKQENLIGKGGSGNVFRVTLSNGKELAVKHIWNTDIDSRTKKSRSWSSGSGSGTPMLAGKRTGKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTRGKMELDWETRYEIAVGAAKGLEYLHHSCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVAKDSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKKPIEAEFGENKDIVSWVHSKAQNKEMFGSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPTMRAVVQMLEDAEPCKLVGIVISKDGSQKKITANAK	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241847g00001	647	FunFam	Receptor-like protein kinase HAIKU2	308	426	-	-
	Stsc241847g00001	647	Gene3D	Phosphorylase Kinase; domain 1	308	426	-	-
	Stsc241847g00001	647	FunFam	Inactive leucine-rich repeat receptor-like protein kinase	30	128	-	-
	Stsc241847g00001	647	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	132	248	-	-
	Stsc241847g00001	647	ProSiteProfiles	Protein kinase domain profile.	325	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241847g00001	647	Pfam	Leucine rich repeat	138	194	IPR001611	GO:0005515
	Stsc241847g00001	647	Gene3D	Transferase(Phosphotransferase) domain 1	427	630	-	-
	Stsc241847g00001	647	FunFam	LRR receptor-like serine/threonine-protein kinase RCH1	427	635	-	-
	Stsc241847g00001	647	Pfam	Leucine Rich Repeat	111	133	IPR001611	GO:0005515
	Stsc241847g00001	647	Gene3D	Ribonuclease Inhibitor	1	253	IPR032675	-
	Stsc241847g00001	647	MobiDBLite	consensus disorder prediction	364	386	-	-
	Stsc241847g00001	647	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	2	621	-	-
	Stsc241847g00001	647	SUPERFAMILY	Protein kinase-like (PK-like)	314	621	IPR011009	-
	Stsc241847g00001	647	Pfam	Protein kinase domain	327	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241847g00001	647	SUPERFAMILY	L domain-like	3	245	-	-
	Stsc241847g00001	647	SMART	serkin_6	325	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241847g00001	647	ProSitePatterns	Protein kinases ATP-binding region signature.	331	353	IPR017441	GO:0005524
	Stsc241847g00001	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241847g00001	Stsc-Chr241847	2361	5823	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241847g00001	1	640	Receptor kinase-like Gene Family	AT1G09970	63.043	0.0	773

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Stsc241847g00001		Pkinase	8.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241847g00001	-		-	gmx:100779554	948.732