LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241845g00007	ATGAAGGTCATCGCCGCCTACCTTCTTGCCGTCCTCGGTGGCAACGCCGCTCCATGCGCCTCCGATCTCAAAGGCATTCTCAGCTCCGTTGGAGCCGAAGCAGATGATGACAGCATAACGCTCCTTTTGTCTGAAGTGGAAGGAAAAGACATTACAGAGGTTATTGCCGCCGGAAGGGAAAAGCTTGCGTCGGTGCCAGCTGCTGGTGGTGGTGCTGTTGCCGTTGCCGCTGCTCCTAGTGGTGGTGCTGCTGCTCCCGCAGCCGCCGAGGCAAAGAAGGAGGAGAAGGTCGAAGAGAAGGAGGAATCAGACGATGATATGGGATTCAGTCTCTTTGATTAA	342	0.5556	MKVIAAYLLAVLGGNAAPCASDLKGILSSVGAEADDDSITLLLSEVEGKDITEVIAAGREKLASVPAAGGGAVAVAAAPSGGAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD	113

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241845g00007	113	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	1	113	IPR044076	GO:0002182\|GO:0003735\|GO:0022625
	Stsc241845g00007	113	Gene3D	-	1	59	IPR038716	-
	Stsc241845g00007	113	Pfam	60s Acidic ribosomal protein	18	112	-	-
	Stsc241845g00007	113	CDD	Ribosomal_P2	1	113	IPR044076	GO:0002182\|GO:0003735\|GO:0022625
	Stsc241845g00007	113	FunFam	60S acidic ribosomal protein P2	1	59	-	-
	Stsc241845g00007	113	PRINTS	Ribosomal protein P2 signature	76	90	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241845g00007	113	PRINTS	Ribosomal protein P2 signature	21	32	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Stsc241845g00007	113	Hamap	50S ribosomal protein L12 [rpl12].	2	113	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Stsc241845g00007	113	MobiDBLite	consensus disorder prediction	85	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241845g00007	Stsc-Chr241845	43116	44061	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241845g00007	1	113	Cytoplasmic Ribosomal Protein Gene Family	AT3G44590	67.257	2.75e-30	102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241845g00007	K02943		-	ini:109157798	126.716