Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241844g00005 ATGTCTCTGCTTCTTCTTAAGCTTCAAGTTTTTCTCCTTCTGATATGTGCTTCTCCATCTGCTCTTCCTTCAAAGACCACCGAGCTTGACATTCTCATGACTATCAAAGACTCTCTTGACCCACAAAACCGGGTCTTGACTTCGTGGGCCCCACACTCTGACCCATGTAGCAGTGCTGCTGGTGACTTTGAGGGCGTAGCTTGCAACCAAGAAGGTCTTGTAGCCAATATCTCACTGCAAGGAAAGGGTCTCTCTGGAAGAATACCTTCAGCCATTTCTGGTCTTAAGAGCTTGACGGGTCTCTATCTTCACTTCAATGCTCTCAATGGAATTTTACCCAAGGAGATTGCTGCCTTGACTCAACTCACTGACTTGTATCTCAATGTCAATGAACTCTCTGGTGATATCCCTCGTGAGATTGCTAACCTCTCTAATCTTCAAGTTTTGCAGATTAGCTATAACGAGTTCACTGGCGGTGTGCCTTCTGAACTGAAGAAGTTGAAGAAGCTTAGCGTTCTTTCGGTGCAATATAATCAATTAAACGGCGCAATTCCAGCAAGTTTGGGTGAATTGGAGTCACTAACACGAATAGATCTGAGCTTCAACCAATTTTTTGGTCCAATCCCTGTGAGTTTGGCTTATGCACCCAAACTGAAGATTCTTGATGTTCGAAACAATTCTCTCTCGGGGAATATCCCTAAAGCGCTAGAAAGACTTAAAGGTGGATTCCAATACATGAACAACCCTGGTTTATGCGGAACCGGATTCGCCAAATTAGCTCCTTGTAAAGCAGTAATCAGTAGTTCAGACCCGATCAGGCCGGAACCATATGAGCCTCGTAATCTTTCTACAGAGGTTCTTCCAACAACTGTTCAACCAAAAGATATAAAGGCATCAAAATCATCAAATATCGGTTTGGTCTTCGGGATAATTGCAGTTACTTTCGCCTCAACTATCTTTGGCCTCTTTATAGTCTTATGGTACCGGCATCAGAAATTGAAAATTGGGACCACTGCTAACACTACTGATACTCGGCTTAGTCTTAACAAGATCAGGGAACCGCGCGGCAAAATTGCATCTCCTCTGATAAGTTTAGAATACTCCAATGGATGGGATCCTTTAGCCAAAGGTCAAAGTGGTTACTCCCAGGAATTTCTAGAGAGCTTAATCTTCAATCTTGAAGATATCGAGCGCGCAACGCAGTGTTTCTCGGAGCTAAATCTGTTGGGGAAGAGTGACTTTTCAACTGTCTACAGGGGAATACTAAGAGATGGATCTGTTGTGGTAGTAAAGTGCATTTCCAAAACAAGCTGCAAGCCTGATGAAACTGAGTTCTTGAATGGGTTGAAGATATTGGCCTCACTGAGGCATGAAAATCTGGTCCGGTTGAGAGGCTTTTGTTGTTCCAAGAGCCGTGGAGAATGTTTTCTGGTCTATGATTTTATCTCGAATGGGAGTTTGTTACGGTACCTTGATGTTAAGAGAGCTGATGATGATGCTATAGTTCTTGAATGGTCCACGAGAGTATGCATCATCCATGGCATTGCTAAAGGTATTGCTTATCTGCATGGAAAGAAAGGAAGCAAATGTAGTCTAGTTCACCAGAATTTATCAGCCCATACAGTGCTTCTTGATGCTCGCTATAATGCCGTTCTTGCATATTCGGCATTGCACAAACTCCTCGCTGACGATATCGTCTTCTCCACCCTTAAAGCTAGTGCAGCCATGGGATATCTGGCTCCGGAATACACGAAAACTGGCCGTCTAACTGAGAAGAGTGATGTGTACGCATTTGGGGTGATGGTTTTCCAGCTTCTTAGTGGTAAACGTGACATCACTCAGTTAAGTCGCCAGGGGATGGAAACTGCCAGTTACAGAGATGTAGTAGATGAGAAACTTGAAGGGAAGTTCTCGGAATCAGAGGCTGCGAAACTGTGGGGTGTTGCTCTGCTTTGCATCCACGAATCTCCCCATCTCCGACCATATATGGAAGATGTGATTCAAGAACTGTGTGATTAA 2019 0.4398 MSLLLLKLQVFLLLICASPSALPSKTTELDILMTIKDSLDPQNRVLTSWAPHSDPCSSAAGDFEGVACNQEGLVANISLQGKGLSGRIPSAISGLKSLTGLYLHFNALNGILPKEIAALTQLTDLYLNVNELSGDIPREIANLSNLQVLQISYNEFTGGVPSELKKLKKLSVLSVQYNQLNGAIPASLGELESLTRIDLSFNQFFGPIPVSLAYAPKLKILDVRNNSLSGNIPKALERLKGGFQYMNNPGLCGTGFAKLAPCKAVISSSDPIRPEPYEPRNLSTEVLPTTVQPKDIKASKSSNIGLVFGIIAVTFASTIFGLFIVLWYRHQKLKIGTTANTTDTRLSLNKIREPRGKIASPLISLEYSNGWDPLAKGQSGYSQEFLESLIFNLEDIERATQCFSELNLLGKSDFSTVYRGILRDGSVVVVKCISKTSCKPDETEFLNGLKILASLRHENLVRLRGFCCSKSRGECFLVYDFISNGSLLRYLDVKRADDDAIVLEWSTRVCIIHGIAKGIAYLHGKKGSKCSLVHQNLSAHTVLLDARYNAVLAYSALHKLLADDIVFSTLKASAAMGYLAPEYTKTGRLTEKSDVYAFGVMVFQLLSGKRDITQLSRQGMETASYRDVVDEKLEGKFSESEAAKLWGVALLCIHESPHLRPYMEDVIQELCD 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241844g00005 672 Pfam Protein tyrosine and serine/threonine kinase 407 670 IPR001245 GO:0004672|GO:0006468
Stsc241844g00005 672 SUPERFAMILY L domain-like 27 240 - -
Stsc241844g00005 672 Gene3D Phosphorylase Kinase; domain 1 375 481 - -
Stsc241844g00005 672 CDD STKc_IRAK 409 671 - -
Stsc241844g00005 672 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Stsc241844g00005 672 Gene3D Ribonuclease Inhibitor 25 258 IPR032675 -
Stsc241844g00005 672 Gene3D Transferase(Phosphotransferase) domain 1 483 672 - -
Stsc241844g00005 672 Pfam Leucine rich repeat 144 204 IPR001611 GO:0005515
Stsc241844g00005 672 FunFam Protein NSP-INTERACTING KINASE 2 375 481 - -
Stsc241844g00005 672 ProSiteProfiles Protein kinase domain profile. 403 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241844g00005 672 SUPERFAMILY Protein kinase-like (PK-like) 380 670 IPR011009 -
Stsc241844g00005 672 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Stsc241844g00005 672 FunFam Protein NSP-INTERACTING KINASE 2 25 177 - -
Stsc241844g00005 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 79 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241844g00005 Stsc-Chr241844 41464 45674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241844g00005 4 518 Miscellaneous Gene Families AT4G22730 46.729 1.32e-158 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc241844g00005 PK_Tyr_Ser-Thr 6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241844g00005 - - vun:114183221 889.026