Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241844g00002 | ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATGCTGTTTTAAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCCCAATGGTGCTACATCATGTACTCTCCTCCACCTCCTTCAATCGTTCTTGGTGACGATTCAGATGACGATGATGCTTCCTCTGGCTTCCAATTCTCTCCCCTCATAGTCGCAGTTATTGGAATCTTGGCAAGCACTTTCATCTTGGTTACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGGAGAATCAACGATCCGAATTACCAAGAAAATCGCAGTACCAACGATGATAGTCTTAATAACAATGAATCTTCTCAGGCTTCTGCGACTTACGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACGTAAAGAACGGCGGGTTAGTTGAAGGAAGCGACTGTTCCGTTTGTTTATCTGAGTTTCAAGAAAATGAAAGCTTGAGATTGTTGCCGAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCATTGTGCCGTTCCAATATTGTTTTCAATAATAATAGTAATAATCCGAATCTGAGTGAGAGCGGTTCGGCATTGGCGGAGGTTCCGCATCCGCAACCGGCAAGGGTTAGTGTCAATTCTTTGGAATATCAGCAGGGAAGTGATGATGTTGTTACAATAATTGTTCAGAGTTCACAGCAAAGTTTACAGCAGCAGCAGGCTGTGGTTGATTTTGGTAATGAAGTTCAAGTGAAGTGGCCAAACGTTGCAAGTGCTAATAATAATACTAGTCAAAGAAGATTATCGGTTGCTGACATATTGAATCAAGATGATGAAGCTGATGATGTGTAG | 894 | 0.4262 | MGSVSNTNPWVAPNAVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDDSDDDDASSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRINDPNYQENRSTNDDSLNNNESSQASATYGMDEAQIKSITVCKYVKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFNNNSNNPNLSESGSALAEVPHPQPARVSVNSLEYQQGSDDVVTIIVQSSQQSLQQQQAVVDFGNEVQVKWPNVASANNNTSQRRLSVADILNQDDEADDV | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241844g00002 | 297 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 200 | IPR013083 | - | |
Stsc241844g00002 | 297 | CDD | RING-H2_EL5-like | 149 | 192 | - | - | |
Stsc241844g00002 | 297 | MobiDBLite | consensus disorder prediction | 99 | 118 | - | - | |
Stsc241844g00002 | 297 | SUPERFAMILY | RING/U-box | 144 | 200 | - | - | |
Stsc241844g00002 | 297 | FunFam | E3 ubiquitin-protein ligase ATL6 | 113 | 198 | - | - | |
Stsc241844g00002 | 297 | Pfam | Ring finger domain | 149 | 192 | IPR001841 | - | |
Stsc241844g00002 | 297 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 53 | 268 | IPR044600 | GO:0016567|GO:0016740 | |
Stsc241844g00002 | 297 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 192 | IPR001841 | - | |
Stsc241844g00002 | 297 | SMART | ring_2 | 150 | 191 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241844g00002 | Stsc-Chr241844 | 15333 | 16828 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241844g00002 | 1 | 196 | C3H Transcription Factor Family | AT3G03550 | 53.555 | 5.18e-67 | 211 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241844g00002 | - | - | adu:107495094 | 471.085 |