Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241844g00002 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATGCTGTTTTAAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCCCAATGGTGCTACATCATGTACTCTCCTCCACCTCCTTCAATCGTTCTTGGTGACGATTCAGATGACGATGATGCTTCCTCTGGCTTCCAATTCTCTCCCCTCATAGTCGCAGTTATTGGAATCTTGGCAAGCACTTTCATCTTGGTTACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGGAGAATCAACGATCCGAATTACCAAGAAAATCGCAGTACCAACGATGATAGTCTTAATAACAATGAATCTTCTCAGGCTTCTGCGACTTACGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACGTAAAGAACGGCGGGTTAGTTGAAGGAAGCGACTGTTCCGTTTGTTTATCTGAGTTTCAAGAAAATGAAAGCTTGAGATTGTTGCCGAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCATTGTGCCGTTCCAATATTGTTTTCAATAATAATAGTAATAATCCGAATCTGAGTGAGAGCGGTTCGGCATTGGCGGAGGTTCCGCATCCGCAACCGGCAAGGGTTAGTGTCAATTCTTTGGAATATCAGCAGGGAAGTGATGATGTTGTTACAATAATTGTTCAGAGTTCACAGCAAAGTTTACAGCAGCAGCAGGCTGTGGTTGATTTTGGTAATGAAGTTCAAGTGAAGTGGCCAAACGTTGCAAGTGCTAATAATAATACTAGTCAAAGAAGATTATCGGTTGCTGACATATTGAATCAAGATGATGAAGCTGATGATGTGTAG 894 0.4262 MGSVSNTNPWVAPNAVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDDSDDDDASSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRINDPNYQENRSTNDDSLNNNESSQASATYGMDEAQIKSITVCKYVKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFNNNSNNPNLSESGSALAEVPHPQPARVSVNSLEYQQGSDDVVTIIVQSSQQSLQQQQAVVDFGNEVQVKWPNVASANNNTSQRRLSVADILNQDDEADDV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241844g00002 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 200 IPR013083 -
Stsc241844g00002 297 CDD RING-H2_EL5-like 149 192 - -
Stsc241844g00002 297 MobiDBLite consensus disorder prediction 99 118 - -
Stsc241844g00002 297 SUPERFAMILY RING/U-box 144 200 - -
Stsc241844g00002 297 FunFam E3 ubiquitin-protein ligase ATL6 113 198 - -
Stsc241844g00002 297 Pfam Ring finger domain 149 192 IPR001841 -
Stsc241844g00002 297 PANTHER RING-H2 FINGER PROTEIN ATL16 53 268 IPR044600 GO:0016567|GO:0016740
Stsc241844g00002 297 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Stsc241844g00002 297 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241844g00002 Stsc-Chr241844 15333 16828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241844g00002 1 196 C3H Transcription Factor Family AT3G03550 53.555 5.18e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241844g00002 - - adu:107495094 471.085