Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241843g00010 ATGATGGTTGCTCACGACGGAAGCGGTGGAGGCCAGACTCGTTCACAACAAGAACTGGAAACAGTGAGAGTGAAATCAGAGCAAGTCACGTCTCCCTGCTACTACTTTGATCAAAACGACGACGTTAAGAGTAACTCGGAAGTGACGGAAGAAGATGAAGAAGAAGAGGCTCGCGTGAAACAAGAGGTTGCTGATGAAGGCGCCGTTAACTTCTCCTCATCTTCGTCGTCGGTCGAGTTGCCGAAACCGATGGAAGGCCTTAATGAGGCGGGTCCGCCACCGTTTCTAAGGAAGACTTTCGAGATGGTGGAGGATCCGGAAACCGACCCGATTGTCTCTTGGAGCCAGAACCGCGATAGCTTCGTCGTTTGGGACTCTCATGAGTTCGCCAAAGTTCTTCTTCCAAAGTATTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGGTTTAGAAAGGTTGATTCAGATCGTTGGGAATTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAACTGCATCAAGGAGCTTTCATCAACCCTGCAAAGCCTTGCCTTGAGGCTGAAGTTGAGAAGCTCAAGAAGGACCAAAACATACTCAAACTTGAAATTCTCAAGCTCAGACAACAGCAAGAGAATTCACACATTCATCTCGCAACCGTTCAGGATCGGATTCAGAGCGCCGAGACAAAGCAGTATCAGATGATATATTTCCTCACCAAAATGGCCAAAAAGCCACTGTTTGTGGAACAGCTCCTGCAAAAGGTTAAGAGGAAGAGGGAGATCGATGGCGCCGACATGTTCAAGAGGCCGCGCAGATTGCTGGAACCAGCCCCTAGTGGTGTTGATTATAGATCCCAACAAGGTCATGAACAATTTGCTACATTGCAATCTGAACTCGATGGACTATTGTCTGAAAATGTGATGTGCACTAGCAATAAGATGGATCACACTGTTCCTTCTCCTCTGGAGGGTGAGTTATGCAACAAGGTACAAGGCCTTAGAAGCTATGGTTCTTCAAGGGGGAGTGATGTACCTTCTGCTTATCATGCTATGTCAGAGAATCTATTGGCAGAAAATAATGGAGGTGCTGATGAAGAACTTGATGTTAATGACTCAAATATTTATCTTGAGTTGGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGTTCTGCATCTGTTGGTGGCTTGGTGGGACAAACTAGTTGA 1263 0.4624 MMVAHDGSGGGQTRSQQELETVRVKSEQVTSPCYYFDQNDDVKSNSEVTEEDEEEEARVKQEVADEGAVNFSSSSSSVELPKPMEGLNEAGPPPFLRKTFEMVEDPETDPIVSWSQNRDSFVVWDSHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFINPAKPCLEAEVEKLKKDQNILKLEILKLRQQQENSHIHLATVQDRIQSAETKQYQMIYFLTKMAKKPLFVEQLLQKVKRKREIDGADMFKRPRRLLEPAPSGVDYRSQQGHEQFATLQSELDGLLSENVMCTSNKMDHTVPSPLEGELCNKVQGLRSYGSSRGSDVPSAYHAMSENLLAENNGGADEELDVNDSNIYLELEDLITKPTDWVGSASVGGLVGQTS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241843g00010 420 SMART hsfneu3 91 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 SUPERFAMILY "Winged helix" DNA-binding domain 91 184 IPR036390 -
Stsc241843g00010 420 MobiDBLite consensus disorder prediction 1 91 - -
Stsc241843g00010 420 Pfam HSF-type DNA-binding 95 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 ProSitePatterns HSF-type DNA-binding domain signature. 134 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 MobiDBLite consensus disorder prediction 67 81 - -
Stsc241843g00010 420 Gene3D - 88 185 IPR036388 -
Stsc241843g00010 420 MobiDBLite consensus disorder prediction 9 42 - -
Stsc241843g00010 420 PRINTS Heat shock factor (HSF) domain signature 95 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241843g00010 420 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 81 308 IPR027725 -
Stsc241843g00010 420 Coils Coil 207 227 - -
Stsc241843g00010 420 FunFam Heat shock transcription factor 1 88 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241843g00010 Stsc-Chr241843 65002 67461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241843g00010 81 406 HSF AT2G26150 42.169 9.23e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc241843g00010 HSF_DNA-bind 6.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241843g00010 K09419 - gmx:100818430 516.924