Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241843g00008 ATGGAACCTCGTGTTGGTAACAAGTTTCGGCTGGGGAGGAAGATCGGTAGCGGCTCCTTTGGGGAGATCTACTTAGGTACTAATATTCAGACTAACGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGTTATACAGAATTCTACAAGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTCAACTTCTGTAGTAGAAAGCTGTCACTGAAGACCGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTACATCGGGATATTAAACCAGATAATTTTCTGATGGGCTTAGGAAGGCGTGCAAATCAAGTTTATGCTATTGATTTTGGTCTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAACAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTGGGCATTGAGCAAAGTCGCAGAGATGATTTAGAGTCTCTTGGTTATGTTTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCTGGGACAAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAAGTTTCTACCTCAATTGAAGCACTGTGTCGCGGCTATCCAACTGAATTTGCATCATACTTTCACTACTGTCGCTCATTAAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTCCGCGACCTCTTTATCCGTGAAGGTTTCCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAACTAGCCACTCCTCCAACTAGGGGCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCACCAGTTGTTATTACTAATGCTGATAGACAGACAGGTGGGGAAGAAGGGCGGCCTCCTGGTTTGATTTCGGTGGATTCTTCAAGGCGGAGAATGTCGGGGCCCATTTTATCAAGTGCCAATATCTTGGGCCAGTCAAGTGGATCATCGAGGCGGGCTGCTGTTTCTGGTAGCCGGGAAGCATTTGTTGGTGCCGATTCAGATGTTCGTGCTCGAAATGTCGAGGCTAACCCTGGAGCAGCACACAGGATTACGAGTGGGCAAAGAAGTTCACCAGTTGGATCTTCTGAACCCCAGAGAATAACAGCATCTGGTAGGCATGGTTCTCATGCCAGGAATTATGACAGCGCAGTCAGGGGTATGGAGAATCTGCAATTAGAGAATGACGAGAGGGCTCATTATTAA 1359 0.4364 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRGIGPSAGTSSGMPPVVITNADRQTGGEEGRPPGLISVDSSRRRMSGPILSSANILGQSSGSSRRAAVSGSREAFVGADSDVRARNVEANPGAAHRITSGQRSSPVGSSEPQRITASGRHGSHARNYDSAVRGMENLQLENDERAHY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241843g00008 452 FunFam Casein kinase I isoform delta-like 1 308 - -
Stsc241843g00008 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241843g00008 452 CDD STKc_CK1_delta_epsilon 8 282 - -
Stsc241843g00008 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241843g00008 452 MobiDBLite consensus disorder prediction 401 421 - -
Stsc241843g00008 452 MobiDBLite consensus disorder prediction 393 452 - -
Stsc241843g00008 452 FunFam Putative Casein kinase I 1 85 - -
Stsc241843g00008 452 MobiDBLite consensus disorder prediction 349 372 - -
Stsc241843g00008 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc241843g00008 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241843g00008 452 PANTHER CASEIN KINASE-RELATED 9 388 - -
Stsc241843g00008 452 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Stsc241843g00008 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Stsc241843g00008 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc241843g00008 452 MobiDBLite consensus disorder prediction 325 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241843g00008 Stsc-Chr241843 43647 47676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241843g00008 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.19e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc241843g00008 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241843g00008 K02218 - gmx:100811567 832.402