Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241843g00003 ATGTCAACCTTCGCCGTCGCCGGTGCCGAAATGAGATCGGTTGCTGTTGCCGTCAGTGGAGGCTCCGGCGGCGCCAGGGGCAGCCGGCGAGCCGTGCAGTGGGCGGCGGAGAATCTCGTGCCTCAAGCCGATAGGTTCATCTTAGTCCACGTCATCCCTAGAGTCACTTCAATTCCAACGCCATCTGGAGAGTGTGTTCCGATTTCAGAAGCAGATTCGGATGTGTTTGCAGCTTATGTTCAGGACGTGAAGCAAAAATCTGAAGAAATATTTGTTCCATTCAAGGAACTATGCAAATCACGCACGATAGAAACCTTGCTACTAGAAGATGATAATCCTGCAAATGCACTTCTTAGCTTTATCTCTGAGTCTGGCATCCATATACTAGTGATGGGTTCTGACTCCTCAAATTTTATTACAAGAAAACTAAAAGGACCAGGGATATCAGCGACCGTTCTAAGAAGTGCTCCTGACAGCTGTGATGTATATCTTGTAGCTAGAGATAAAATTATGTCTAAGTTAGCTGATTCTCCATCTTTTAATTCTCAAGAGAGTAGTTCGAGGTACTCTGTGAATTCTCAAGAAAATAAAGGGGAAAGTGGTGTAGGGATTGGCAGAGAAATGTCCGGAATTAATACTCCAATTCTAAAAAAATTTCGATTTTTATCAATATCAGATCGTAGTTATATCGGTCTACAAACATCCAGTCGCAGGAGCTCATTTGATAATTCTAGCAGTGTTGATGATTTTGAAGCTATTAGCCTCCACTCATTCGACTCCATAACTTCTGCACAACGTGAACAGTTAGCAATGCAAGAAGAAGTGGATCGGATACAGCTTGAGTTGCAGAATACTATTGCTATGTACAAACAGGTCTGTGAAGACCTAGCTCATGTTCGAAACAAGACCCTTCTACTTTCTTCTGAATCTCTTGAAGAAGCTAAAAGAGTACACGCTTCCCTTCAAAACGAGCAGACTCTGAGAAAAATTGCTGCTGAAGAGAAGGAGAAGTATTTAAAAGTTATGAAGGAACTTGAGGAGGCCAAAAACGTGCTTGCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAGTCCATCGAAAAAAAGAGAATAGTCGATACATTGATCTCACATGACAAGAGATACAGAATTTACACCATGGATGAAATCAAGGAAGCAACAAATTTCTTTTCCGAGGACTTGGTAATTGGTGAAGGAGGGTATGGGAAAGTTTACAAGTGCACTCTGGATCACACACCAGTAGCTGTGAAGGTTCTGCATCCAGATGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTACACCATCCAAACATGGTTTTGTTACTTGGAGCTTGTCCAGATACCGGTTGCCTTGTTTATGAATACATGGACAATGGAAGTCTAGAAGACTATATTTTCAATAGAAATGGGAAACAGTCTCTTCCTTGGTTTACTCGATTCCATATTGTTTTTGAGATGGCATGTGGACTCTCATTCTTACATAACACAAAGCCAGAGCCGATTGTTCATCGAGATATCAAACCTGGCAATGTCTTGTTAAACAGAAATTATGTGAGCAAAATTGCGGACGTAGGGCTGGCTAAACTCCTTTCAGATGTCGTGCCTGACAATGTCACAGAGTATAGAGACTCCATGCTTGCTGGTACTCTCCATTACATGGATCCAGAGTATCAGAGAACTGGCACAGTCCGAACAAAATCAGATGTATATGCTTTTGGACTCATAACTCTTCAGTTGATAACTTCTCGCCATGCACGTGGACTCATTTTGGCTATTGAAGATGCAGTTACAAAGGGCTCCCTTGGTGATATTTTAGACAAATCAGCCGGTGATTGGCCACTCAATGAAACATTGGAATTGGCCCAGATTGCGCTTAAATGTGTTGCACTTAGATGCAGGGATAGACCAGATCTTAACACTGAAGTTCTTCCACAGCTTGAAAGACTTTCTGTTGTGGCAGATGCAGGTGCAAGGATAACAAGAAGAAAGAGTATAGGCACACCAAGCCAGTATTATTGCCCAATCCTTCAGGAAGTAATGGAAGATCCGCATGTGGCCGCGGACGGTTTCACTTATGAGTGCAGAGCAATCAAAGCATGGCTTAGCAGACACAATGTGTCACCTGTAACAAAACGTAAACTCAGAAATTCTATGTTGATTCCAAACCACACTTTACGTTCTGCCATTCAAGAGTGGAAGTCAGGAGTGTCCTCATTTGATTAG 2280 0.4241 MSTFAVAGAEMRSVAVAVSGGSGGARGSRRAVQWAAENLVPQADRFILVHVIPRVTSIPTPSGECVPISEADSDVFAAYVQDVKQKSEEIFVPFKELCKSRTIETLLLEDDNPANALLSFISESGIHILVMGSDSSNFITRKLKGPGISATVLRSAPDSCDVYLVARDKIMSKLADSPSFNSQESSSRYSVNSQENKGESGVGIGREMSGINTPILKKFRFLSISDRSYIGLQTSSRRSSFDNSSSVDDFEAISLHSFDSITSAQREQLAMQEEVDRIQLELQNTIAMYKQVCEDLAHVRNKTLLLSSESLEEAKRVHASLQNEQTLRKIAAEEKEKYLKVMKELEEAKNVLAKESYERQMAELDVLKESIEKKRIVDTLISHDKRYRIYTMDEIKEATNFFSEDLVIGEGGYGKVYKCTLDHTPVAVKVLHPDAINKKEEFLKEVEILSQLHHPNMVLLLGACPDTGCLVYEYMDNGSLEDYIFNRNGKQSLPWFTRFHIVFEMACGLSFLHNTKPEPIVHRDIKPGNVLLNRNYVSKIADVGLAKLLSDVVPDNVTEYRDSMLAGTLHYMDPEYQRTGTVRTKSDVYAFGLITLQLITSRHARGLILAIEDAVTKGSLGDILDKSAGDWPLNETLELAQIALKCVALRCRDRPDLNTEVLPQLERLSVVADAGARITRRKSIGTPSQYYCPILQEVMEDPHVAADGFTYECRAIKAWLSRHNVSPVTKRKLRNSMLIPNHTLRSAIQEWKSGVSSFD 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241843g00003 759 Pfam Protein tyrosine and serine/threonine kinase 407 658 IPR001245 GO:0004672|GO:0006468
Stsc241843g00003 759 Gene3D Phosphorylase Kinase; domain 1 380 474 - -
Stsc241843g00003 759 ProSiteProfiles U-box domain profile. 685 758 IPR003613 GO:0004842|GO:0016567
Stsc241843g00003 759 SUPERFAMILY RING/U-box 685 752 - -
Stsc241843g00003 759 Coils Coil 328 374 - -
Stsc241843g00003 759 CDD STK_N 13 167 - -
Stsc241843g00003 759 MobiDBLite consensus disorder prediction 176 204 - -
Stsc241843g00003 759 MobiDBLite consensus disorder prediction 176 199 - -
Stsc241843g00003 759 Gene3D HUPs 10 173 IPR014729 -
Stsc241843g00003 759 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 474 - -
Stsc241843g00003 759 SMART Ubox_2 689 751 IPR003613 GO:0004842|GO:0016567
Stsc241843g00003 759 PANTHER OS02G0152300 PROTEIN 14 750 - -
Stsc241843g00003 759 ProSitePatterns Protein kinases ATP-binding region signature. 408 429 IPR017441 GO:0005524
Stsc241843g00003 759 FunFam Os07g0541700 protein 475 563 - -
Stsc241843g00003 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Stsc241843g00003 759 Coils Coil 261 281 - -
Stsc241843g00003 759 CDD RING-Ubox_WDSUB1-like 687 741 - -
Stsc241843g00003 759 Pfam U-box domain 687 752 IPR003613 GO:0004842|GO:0016567
Stsc241843g00003 759 SUPERFAMILY Protein kinase-like (PK-like) 384 657 IPR011009 -
Stsc241843g00003 759 SMART serkin_6 402 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241843g00003 759 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 167 - -
Stsc241843g00003 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 756 IPR013083 -
Stsc241843g00003 759 ProSiteProfiles Protein kinase domain profile. 402 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241843g00003 759 Gene3D Transferase(Phosphotransferase) domain 1 475 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241843g00003 Stsc-Chr241843 11130 15071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241843g00003 13 753 Plant U-box Gene Family AT5G57035 52.887 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc241843g00003 PK_Tyr_Ser-Thr 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241843g00003 - - gmx:100805896 1120.53