Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241842g00014 ATGCTTCATTTTCTTAGCAGAAGAACCCTTTCTCTTTCAACATCAAAACCACACTCTTTGTGGAACCATCCATGGCTTCAAGCGAAATTCAGCTCCACTGCCACCACCACCACTTGTTCAAGATCAAAAGGTAACTCCTTTACTGTCTCATACCTCATTCACACTTGTGGGTTCTCTCCACAATGCGCCCTTTCGGTTTCCAAGCACTTGAATTTTGAAACTAACGAAAAACCAGAGTTGGTGTTTGAGTTCTTCAAGAACCATGGCTTCACACAAACCCAGGCATTAAGTATTATCAGAAAATCACCCCAGCTCCTTAGAGCTAACTCTGTGAAATCTGTGCAGCCAAAGATTGATTATTTCAAGTCCAAGGGAGTTTCAGATCCTGACATACGCCTCATCTTGATGAGTTGGCCTACAATCCTCCTAAGAAGCTTGGAGAAGGAAATCATTCCCTCTTTTGATTTCTTATGCAGCATGCTTCAGTCCAACCAAAATCTCACAAAAGTTCTTATTCGCCATGCTGGTATTCTCTGTGACCTTGGCAACTATTTACAACCTAATATTGAAGTGCTGAGAGAAGAGGGAGTTACTGAATCACATGTTGTTAGGTTTATAGAATACTTCCCGCGCACATTTATGTTGTCTTCTAAGAAATTTAAGGAGGCAGTGCAGGCAGTTAAGGAGCTGAAATTTGACCCTTTGAAAATTCAATTTATTATTGCTGTTCAGGTGAAGTTAGCGATATCTAGATCCACATGGTTAAGGAGGGAAGGTATTTATAGAAAGTGGGGTTGGACAGATAATGAGATTTCCACAGCATTTAGAATCCAGCCATGGTGTATGGCGGTTTCAGACAACAAGATAGAGGCAATCATGGATTTTTTGGTAAACAAGTTGGGCTATACACCATTTGTCATTTCTAGGTATCCATTAGTATTGTCCATGAGCTTGGAAAAACGGATTATTCCGAGAGGCTCTGTTATTATAGTTTTGTTGTCAAAGGGTGTAGTGAATATGCCGAGCTTGACGAGATTATATTGTCCTAATGAAACTGTCTTCTTGGATAAGTTTGTTTACCTTCATGAGAAGGAAGCCGCTGAGCTATTAAAGTTGTATCAAGCTAAACTGGCTCTTGCTGGCTTCAAGGCTTCAAAGGAATTGATGAAATAA 1173 0.4032 MLHFLSRRTLSLSTSKPHSLWNHPWLQAKFSSTATTTTCSRSKGNSFTVSYLIHTCGFSPQCALSVSKHLNFETNEKPELVFEFFKNHGFTQTQALSIIRKSPQLLRANSVKSVQPKIDYFKSKGVSDPDIRLILMSWPTILLRSLEKEIIPSFDFLCSMLQSNQNLTKVLIRHAGILCDLGNYLQPNIEVLREEGVTESHVVRFIEYFPRTFMLSSKKFKEAVQAVKELKFDPLKIQFIIAVQVKLAISRSTWLRREGIYRKWGWTDNEISTAFRIQPWCMAVSDNKIEAIMDFLVNKLGYTPFVISRYPLVLSMSLEKRIIPRGSVIIVLLSKGVVNMPSLTRLYCPNETVFLDKFVYLHEKEAAELLKLYQAKLALAGFKASKELMK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241842g00014 390 Gene3D Transcription termination factor 3, mitochondrial 181 372 IPR038538 -
Stsc241842g00014 390 Gene3D Transcription termination factor 3, mitochondrial 60 180 IPR038538 -
Stsc241842g00014 390 FunFam Mitochondrial transcription termination factor-like 146 366 - -
Stsc241842g00014 390 Pfam mTERF 83 241 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 Pfam mTERF 149 354 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Stsc241842g00014 390 PANTHER CGI-12 PROTEIN-RELATED 43 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241842g00014 Stsc-Chr241842 71785 72957 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241842g00014 mTERF 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241842g00014 K15031 - qsa:O6P43_003531 330.872