Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241842g00011 ATGTCTCAATTTCTGATTCCATCCAAACTCTTCTCTTCAATCAACAATCCATGGCAATGGCTTTCTCTGAGACTCTTCTCCTCAAGTATCTCAACCCGTTCTTCTTCAAGTTCCAAAGGCCACTCTTTCACCGTCTCATACCTCGTTCGAACTTGCGGGTTCTCACCAGAACGCGCAGTTTCCGTTTCGAAACGCTTCAGCTTCGAAACAAGCGAAAAGCCTGATTCGGTGATTGCGTTCTTCAGGAGCATTGGTTTATCCCAATCCACAGCCTCCAGAGTCTTCCAATACATGCCACAGTTACTCATAGCCAATCCCGAGAAATCTTTGCAGCCGAAAATCGATTTTTTCAAGTCCAAAGGGTTTTCCACCTCTGATATATGCAAGGCCATTGTTTATTGCCCTTCGATCCTCGTTCGAAGCGTGCCGAATCAAATTGCTCCGACTTTCGATTTCTTCGATCACATGTTTCAGTGTAGGGACAAGCTCATCAAAGCTGTTAAAGGCAATTCAGGTATTCTCTTTGACTTTAAGGGATATTTAGAACCTAATATTAAGCTTCTTAGAGAAGAAGGAGTTCCTATTTCGCATGTTGTTAGGTTAATAGAGTACTACCCTCGCCAATTGAAGACAAATCCTAAGAAGTATAAGGAGGTATTGGAGGAAGTTAAGGAGATGAAGTTTGATCCCTCCAAGTTTCAGTTTATTGTGGCTGTTCATGTGTTTATTACAGCAGGAAAATCCGCCATGGCGAGAAGGGAAGGTATTTATAGAAGGTGGGGTTGGACGGATCATGATATTTTTGCAGCATTTAGAACCCATCCGTGGTGTCTTTCGATCTCGGACGGCAAGATTGAAGCGGTCATGGATTATCTGGTGAATGAATTGGGTTATGAGTCTTCTGCTATAGCTAAGATTCCGGCGGTGTTGTCCATGAGTTTGAATAGGCGGATCATTCCGAGGGGTTCTGTTATGCTAGTTTTGCAGTCTAAGGGTCTGGTGAGTAAGCTGGGCTTGGCTACAATATTTAGGTGTGATGAAAAGACCTTCTTGAATAAGTTTATCTTCGGCCATCCGAACGAAGCTGAGGAGCTATTGAAGTTGTATCGATCTAAAATAGGAAAAGAGTTAGACCATAAGAGAAATGAATGTAATACTTTATGA 1164 0.4261 MSQFLIPSKLFSSINNPWQWLSLRLFSSSISTRSSSSSKGHSFTVSYLVRTCGFSPERAVSVSKRFSFETSEKPDSVIAFFRSIGLSQSTASRVFQYMPQLLIANPEKSLQPKIDFFKSKGFSTSDICKAIVYCPSILVRSVPNQIAPTFDFFDHMFQCRDKLIKAVKGNSGILFDFKGYLEPNIKLLREEGVPISHVVRLIEYYPRQLKTNPKKYKEVLEEVKEMKFDPSKFQFIVAVHVFITAGKSAMARREGIYRRWGWTDHDIFAAFRTHPWCLSISDGKIEAVMDYLVNELGYESSAIAKIPAVLSMSLNRRIIPRGSVMLVLQSKGLVSKLGLATIFRCDEKTFLNKFIFGHPNEAEELLKLYRSKIGKELDHKRNECNTL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241842g00011 387 Gene3D Transcription termination factor 3, mitochondrial 160 368 IPR038538 -
Stsc241842g00011 387 FunFam Mitochondrial transcription termination factor-like 142 362 - -
Stsc241842g00011 387 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 SMART mt_12 128 160 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 PANTHER CGI-12 PROTEIN-RELATED 39 357 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 Pfam mTERF 182 351 IPR003690 GO:0003690|GO:0006355
Stsc241842g00011 387 Pfam mTERF 79 230 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241842g00011 Stsc-Chr241842 65622 67145 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241842g00011 mTERF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241842g00011 K15031 - qsa:O6P43_003531 324.324