Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241842g00003 ATGCTTCATTTTCTTATCAGAAGAACCCTTTCTCTTCCACCATCAAAACCACACTCTTTGTGGAACCATCCATGGCATCATGTGAAATTCAGCTCCACCGCCACCGCCACCGCTACCACTTGTTCAGGATCAAAAGGTAACTCCTTTACTGTCTCATACCTCATTGACACTTGCGGGTTCTCACCACAACGCGCCCTCTCGGTTTCCAAGCACTTGAATTTTGAAACTAACGAAAAACCAGAGTTGGCATTTGAGTTCTTCAAAAACCATGGCTTAACACAAACCCAGGCGGTAAGTATTATCAGAAAATCACCCCAGCTCCTTAGAGCCAACTTTGTGAAATCTGTGCAGCCAAAGATTGATTATTTCAAGTCCAAGGGGTTTTCAGACCCTGACATACGCCGCATCATGATGTGTTGGCCTACGATCCTCAAAAGTAGCTTGGAGAAGGAAATCATTCCCTCCTTTGATTTCTTAGGCAACATCCTTCAGTCCAACCAAAATCTCACAAAAGTTATTTTAAAGTATGCTGGTATTCTCTGTTACTTTGGCAAATGTTTACAACCTAATATTGAAGTGCTGAGAGAAGAGGGAGTTCCTGAATCACATGTTGTTAGGTTTATACAATACTTCCCGCGCCAATTTACGTCGTCTTCTAAGAAATTTAAGGAGGCAGTGCAGGCAGTTAAGGAGCTGAAATTTGACCCTTTGAAAATGCAGTTTCTTGTTGTTGTTCAGGTGAAGTTAGGAATATCCAGATCCACATGGTTAAAGAGGGAAGGTATTTATAGAAAGTGGGGTTGGACAGATAATGAGATTTCCGCAGCATTTAAATCCCAACCATGGTGTATGGCGGTTTCAGACAACAAGATAGAGGCAATCATGGATTTTTTGGTGAACAAGTTGGGTTGTACACCATCTGTCATTTCTAGGTCTTCATTGGTATTGTCCGTGAGCTTGGAAAAACGGATTATTCCGAGAGGCTCTGTTATTGAAGTTTTGTTGTCAAAGGGTCTAGTGAAAATGCCGAAATTGTATGGAATATTTATTCCTAATGAAGCTGTCTTCTTGGATAAGTTTGTCTATCGTCATGAGAAGGAAGCTGCTGAGCTATTAAAGTTGTATCAAGCTAAACTGGCTCTTGCTGGGTTCAAGGCTTCAAAGAAATTCATGAAATAA 1179 0.4122 MLHFLIRRTLSLPPSKPHSLWNHPWHHVKFSSTATATATTCSGSKGNSFTVSYLIDTCGFSPQRALSVSKHLNFETNEKPELAFEFFKNHGLTQTQAVSIIRKSPQLLRANFVKSVQPKIDYFKSKGFSDPDIRRIMMCWPTILKSSLEKEIIPSFDFLGNILQSNQNLTKVILKYAGILCYFGKCLQPNIEVLREEGVPESHVVRFIQYFPRQFTSSSKKFKEAVQAVKELKFDPLKMQFLVVVQVKLGISRSTWLKREGIYRKWGWTDNEISAAFKSQPWCMAVSDNKIEAIMDFLVNKLGCTPSVISRSSLVLSVSLEKRIIPRGSVIEVLLSKGLVKMPKLYGIFIPNEAVFLDKFVYRHEKEAAELLKLYQAKLALAGFKASKKFMK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241842g00003 392 FunFam Mitochondrial transcription termination factor-like 148 368 - -
Stsc241842g00003 392 Pfam mTERF 188 356 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 Pfam mTERF 85 235 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 PANTHER CGI-12 PROTEIN-RELATED 45 365 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 170 200 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Stsc241842g00003 392 Gene3D Transcription termination factor 3, mitochondrial 164 374 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241842g00003 Stsc-Chr241842 9307 10829 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241842g00003 mTERF 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241842g00003 K15031 - qsa:O6P43_003532 319.701