Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241842g00001 AGAACCCTTTCTCTTTCAACATCAAAACCACACTCTTTGTGGAATCATCCATGGCTTTATGCGAAGTTCCGCTCCACCGCCACCGCCACCGCCACCACTTGTTCAAGATCAAAAGGTAACTCCTTTACTGTCTCATACCTCGTTGACACTTGCGGGTTCTCACCAAAACGCGCCCTTTCGGTTTCCAAGCGGTTGAATTTTGAAACTAACGAAAAACCAGAGTTGGCGTTTGAGTTCTTCAAGAACCATGGCTTCACACAAACCCAGGCATTAAGTATTATCAGAAAAACACCATGGCTCCTTACAGCCAACTCTGTGAAATCTGTGCAGCCAAAGATTGATTATTTCAAGTCCAAGGGGCTTTCAGACCCTGACATACGCCACATCATGATGAATTGCCCTACAATCCTCCTAAGAAGCTTGGAGAAGGAAATCATTCCCTCCTTTGATTTCTTATGCAGCATGCTTCAGTCCAACCAAAATCTCACAAATGTTCTTTTTCGCTATGCTGGTATTCTCTGTGACCTTGGCAGTTGTTTACAACCTAATATTGAACTGATGAGGGAAGAGGGAGTTCCTGAATCACATATTGTTAGGTTTATACAATACTTCCCGAGCGCGTTGAAGTCGTCTTCTCAGAAATTTAAGGAGGCGGTGCAGGAAGTTAAGGAGCCGAGATTTGACCCTTTAAAAATTAAATTTGTTGTTGCTGTTCATGTGAAGTTAGCAATATCTAGATCCACATGGTTAAGGAGGGAAGGTATTTATAGAAAGTGGGGTTGGACGGATGATAAGATTTCTGCAGCATTTAGAATCCAGCCATGGTGTATGACGGTTTCAGACAACAAGATAGAGGCAATCATGGATTTTTTGGTGAACAAGTTGGGTTGTGCACCATCTGTTATTTCTGGGTATCCATCAGTATTCTCCTTGAGCTTGGAAAAGCGAATTATTCCGAGAGGCTCTGTTATTATAGTTTTGTTGTCAAAGGGTCTAGTGAAAGTGCCGAGCTTGACGAGATTATATTTTCCTAAAGAAATTGTCTTCTTGGATAAGTTTGTCTATTGTCATGAGAAGGAAGCTGCTGAGCTATTAAAGTTGTATCAAGCTAAAATGGCTCTTGCTGGGTTCAAGGCTTCAAAGAAATTCATGAAATAA 1158 0.4171 RTLSLSTSKPHSLWNHPWLYAKFRSTATATATTCSRSKGNSFTVSYLVDTCGFSPKRALSVSKRLNFETNEKPELAFEFFKNHGFTQTQALSIIRKTPWLLTANSVKSVQPKIDYFKSKGLSDPDIRHIMMNCPTILLRSLEKEIIPSFDFLCSMLQSNQNLTNVLFRYAGILCDLGSCLQPNIELMREEGVPESHIVRFIQYFPSALKSSSQKFKEAVQEVKEPRFDPLKIKFVVAVHVKLAISRSTWLRREGIYRKWGWTDDKISAAFRIQPWCMTVSDNKIEAIMDFLVNKLGCAPSVISGYPSVFSLSLEKRIIPRGSVIIVLLSKGLVKVPSLTRLYFPKEIVFLDKFVYCHEKEAAELLKLYQAKMALAGFKASKKFMK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241842g00001 385 Pfam mTERF 151 340 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 Pfam mTERF 78 228 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 PANTHER CGI-12 PROTEIN-RELATED 38 359 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Stsc241842g00001 385 Gene3D Transcription termination factor 3, mitochondrial 158 367 IPR038538 -
Stsc241842g00001 385 FunFam Mitochondrial transcription termination factor-like 141 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241842g00001 Stsc-Chr241842 5058 6424 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241842g00001 mTERF 9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241842g00001 K15031 - qsa:O6P43_003531 341.273