Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241840g00010 ATGGCATACCATAACCACCACCACTCCCAAGACCTTTCACCGCTTCACCACCACCAACATTTCAGTGACCAACACCACCAACCTCAACCGCTCTCCGATAACACCGCTATACTTTCCGACCACCTCTCCCCCGCCGACCCCGCCGCCGCCAAATCCCCCTCCGATCCTCATCCCAATTGGCTCAACAACGCCCTTCTCCGCACCCACTACACCAACAACGACACCAACGCCGCCACCAATTTCCTCAACCTCCATACAGCCGCCTCCGCCTCCGACTCCGCCGCAGCTGCTGCTTCACAATCCTCCGCTCAGTGGCTCGCCCGCCCCGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGGTCCTCTATCCAACAACGAATCCCCTGATTTGAAGGTCGCCGGCGACGGCAAGGGGGAGGTAGCAACTGTGGAGAGCCGCGGCGATGGCGGAGGCGGCGGGTTGATGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTTTCTCACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTTCGGATCGCCACGCCGGTGGACCAGTTACCGAGGATCGACGCTCAGTTGGCTCAGTCTCAGAATGTGGTGGCCAAGTACTCCTCCTTCGCTCACGCTCCTCTCGGCGATGACAAGGAACTTGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCTGGGGAAGGTACCGGAGCAACAATGTCCGACGATGAAGATGACCAAGTAGACAGTGATGCCAATCTATTTGGTGCTGGTTTCNNNNNNNNNNGTTCTGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGGCGAGCCGGGAAACTTCCCGGCGACACCACCTCTGTTCTTAAATCCTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAGTTAAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTGA 1284 0.5304 MAYHNHHHSQDLSPLHHHQHFSDQHHQPQPLSDNTAILSDHLSPADPAAAKSPSDPHPNWLNNALLRTHYTNNDTNAATNFLNLHTAASASDSAAAAASQSSAQWLARPVLHRNHSEVIDDVGPLSNNESPDLKVAGDGKGEVATVESRGDGGGGGLMNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFGAGFXXXXSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241840g00010 427 ProSiteProfiles 'Homeobox' domain profile. 350 413 IPR001356 GO:0003677
Stsc241840g00010 427 SMART KNOX1_2 163 207 IPR005540 GO:0003677|GO:0005634
Stsc241840g00010 427 FunFam homeobox protein knotted-1-like 3 isoform X1 351 412 - -
Stsc241840g00010 427 MobiDBLite consensus disorder prediction 25 39 - -
Stsc241840g00010 427 SUPERFAMILY Homeodomain-like 352 416 IPR009057 -
Stsc241840g00010 427 SMART KNOX2_2 216 271 IPR005541 GO:0003677|GO:0005634
Stsc241840g00010 427 Gene3D - 351 412 - -
Stsc241840g00010 427 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 414 - -
Stsc241840g00010 427 SMART ELK_2 330 351 IPR005539 GO:0003677
Stsc241840g00010 427 Pfam KNOX2 domain 220 270 IPR005541 GO:0003677|GO:0005634
Stsc241840g00010 427 MobiDBLite consensus disorder prediction 271 294 - -
Stsc241840g00010 427 ProSiteProfiles ELK domain profile. 330 350 IPR005539 GO:0003677
Stsc241840g00010 427 Pfam Homeobox KN domain 370 409 IPR008422 GO:0003677|GO:0006355
Stsc241840g00010 427 MobiDBLite consensus disorder prediction 9 24 - -
Stsc241840g00010 427 MobiDBLite consensus disorder prediction 407 427 - -
Stsc241840g00010 427 CDD homeodomain 353 414 IPR001356 GO:0003677
Stsc241840g00010 427 Pfam KNOX1 domain 165 206 IPR005540 GO:0003677|GO:0005634
Stsc241840g00010 427 MobiDBLite consensus disorder prediction 1 60 - -
Stsc241840g00010 427 SMART HOX_1 352 417 IPR001356 GO:0003677
Stsc241840g00010 427 Pfam ELK domain 330 351 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241840g00010 Stsc-Chr241840 55449 59281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241840g00010 1 427 Homeobox Transcription Factor Family AT5G25220 65.688 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc241840g00010 KNOX2 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241840g00010 - - pcin:129303573 597.045