Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241840g00001 ATGAACAACTTTTTAGAAGATGATGACCCTACTTGCTTGATGGTTCTAGAAACTCTTCTCAGAAGATGTCAATTTCATGTTACCACAACAAGCCAAGCAATAAAGGCATTGAAGCTGTTGAGAGAAAACAAGTTTGACCTTGTAATAAGTGATGTGAACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTTGAGATGGACCTACCTGTTATAATGTTGTCTGCAAATGGTGATACAAAGCTTGTTATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTACTAAAACCTGTGAGAATTGAAGAGCTGAAGAACATTTGGCAGCATGTGATTAGGCGGAAGAAGTTTGATTCGAAGGAGAAGAACAAAACCAGGAACTCCGACAGGCCTAATTCGGAGACCGGCAATGTGCTAGGGTCAGCAGGAACAGGAAATTCAGAGCAAAATAGGAAGCTGAATAAGAAAAGGAAGGATCAAGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCTTCGGCTCAGAAGAAGCCTCGAGTCGTTTGGTCTTTGGAGCTCCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGAATTGACAAGGTTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAATCTGACGAGGGAGAATGTGGCGAGTCATCTCGAGAAATATAGGCTTTACCTGAAACGAATCAGCTGCGTGGCGAACCAGCAGGCGAATTTGGTGGCGGCCCTAGGAAGCGCAGATCCATCTTACTTGAGAATGGGCTCTATGAGTGGGGTTGATTTACAAGCATTGAGTGGCTCAGGACAGTTTCCTAACAATGCTTTCGGGTCCTTTCCGCCGAATGGGATGGTTAGTAGATTGAACACTCCTACTGGATTGAATGTGCATGGATTCCCTTGTTCCGGAGCATTTCACTTGGGGCAATCACAGAATCTAAACAACTCAAGTGTTGAACAGCTCAAGTACCTGTCATCCATTGTTCCTGTTAATCAGAATAGTGTTCATGGAATGCATGTGGTGCCTATGGGGCTTGATCCATTGCAAAACAATAAGGGTGTTATTCCTGTTCAGAACCTGACACTGTTATTGAGGAATCCCTGTTATTGA 1149 0.4308 MNNFLEDDDPTCLMVLETLLRRCQFHVTTTSQAIKALKLLRENKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTRNSDRPNSETGNVLGSAGTGNSEQNRKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSLELHRKFVAAVNQLGIDKVVPKKILDLMNVENLTRENVASHLEKYRLYLKRISCVANQQANLVAALGSADPSYLRMGSMSGVDLQALSGSGQFPNNAFGSFPPNGMVSRLNTPTGLNVHGFPCSGAFHLGQSQNLNNSSVEQLKYLSSIVPVNQNSVHGMHVVPMGLDPLQNNKGVIPVQNLTLLLRNPCY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241840g00001 382 SUPERFAMILY Homeodomain-like 183 242 IPR009057 -
Stsc241840g00001 382 FunFam Two-component response regulator 181 244 - -
Stsc241840g00001 382 Pfam Myb-like DNA-binding domain 187 237 IPR001005 -
Stsc241840g00001 382 MobiDBLite consensus disorder prediction 133 152 - -
Stsc241840g00001 382 SMART REC_2 1 111 IPR001789 GO:0000160
Stsc241840g00001 382 Pfam Response regulator receiver domain 7 109 IPR001789 GO:0000160
Stsc241840g00001 382 MobiDBLite consensus disorder prediction 121 184 - -
Stsc241840g00001 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 241 IPR017930 -
Stsc241840g00001 382 SUPERFAMILY CheY-like 7 122 IPR011006 -
Stsc241840g00001 382 Gene3D - 181 244 - -
Stsc241840g00001 382 Coils Coil 149 173 - -
Stsc241840g00001 382 ProSiteProfiles Response regulatory domain profile. 2 115 IPR001789 GO:0000160
Stsc241840g00001 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 238 IPR006447 GO:0003677
Stsc241840g00001 382 CDD REC_typeB_ARR-like 7 115 - -
Stsc241840g00001 382 PIRSF RR_ARR_type-B 1 379 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc241840g00001 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 295 IPR045279 GO:0009736
Stsc241840g00001 382 Gene3D - 5 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241840g00001 Stsc-Chr241840 1370 3498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241840g00001 7 364 Response Regulator Gene Family AT2G25180 56.216 5.08e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc241840g00001 Response_reg 5.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241840g00001 - K14491 gmx:100809002 574.704