Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241839g00009 ATGCATGGGAACAAGAGAAAGAAAGAGAAAGGTGATGAATTAGTAGATTACATAAGGAAAGGGCCATGGAAGAAAGAGGAAGATGAAGTGCTACTCAGCCATGTCAGCAAGTATGGCCCTCGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACCGGCAAGTCCTGTCGTCTTCGTTGGGTCAACAAGCTTCGACCAAACCTCAAGAATGGGTGCAAGTTTACAGCAGAGGAAGAGAGGGTTGTGATAGAATTGCAGGCACAATTTGGGAACAAATGGGCTAAGATTGCGTCCTATTTGAGTGGAAGAACGGACAATGATGTCAAGAATTTCTGGAGCAGTAGGCAGAAGAGGCTTGCCAGGATTCTGCAGGCATCATCATCAACATCCAACTCTAAATCACACAGGAACAAACCTAAACCTCATCATCTTCCCAATTTCCAGGCTGCTAAGTTGAGTTCTTCATCAGAGGGAGAATCATCATCATCAAAGCCTCAGCCATGCTCATTCTCCTGCAATGACAATTCCGAGGTTATAAAAATGGTGGCATTACCAGATCTTTTCAAGCCCGAGTTGCCTAATTCTGAGCCAGAAGAATTTGCTGCACCTTTGGAGATCAACAAAAGCAGTAGTAATATGGAACAAACTCCCTTCCCTAATGAACTCCAAACTGATCTAACACCATTCTCATTTGGAGACCAAGATCTCTTGGCCAGAATTGATGATCCAAGTTTTGCTGATTTCTTTGGACCTCTTGGTGCATATGAGCTTGGGCTAGCCCCACAACACACCATTGGGTTCCCTTTCTTTGATCCATCAGAAGCAAGTTGCAGAATGGGGTCAAGGTTAGGTATCTCCAAAAGCTATGACAGCGTCTTTGATGATTTCCCAGTAGACATGTTTGATCAGATGGATCCACCTTCAATTCCTTCCAAGCTCTGA 951 0.4427 MHGNKRKKEKGDELVDYIRKGPWKKEEDEVLLSHVSKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTAEEERVVIELQAQFGNKWAKIASYLSGRTDNDVKNFWSSRQKRLARILQASSSTSNSKSHRNKPKPHHLPNFQAAKLSSSSEGESSSSKPQPCSFSCNDNSEVIKMVALPDLFKPELPNSEPEEFAAPLEINKSSSNMEQTPFPNELQTDLTPFSFGDQDLLARIDDPSFADFFGPLGAYELGLAPQHTIGFPFFDPSEASCRMGSRLGISKSYDSVFDDFPVDMFDQMDPPSIPSKL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241839g00009 316 Gene3D - 20 72 - -
Stsc241839g00009 316 MobiDBLite consensus disorder prediction 126 172 - -
Stsc241839g00009 316 Pfam Myb-like DNA-binding domain 76 115 IPR001005 -
Stsc241839g00009 316 Pfam Myb-like DNA-binding domain 23 73 - -
Stsc241839g00009 316 FunFam MYB transcription factor 20 72 - -
Stsc241839g00009 316 ProSiteProfiles Myb-like domain profile. 76 119 IPR001005 -
Stsc241839g00009 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 71 IPR017930 -
Stsc241839g00009 316 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Stsc241839g00009 316 CDD SANT 22 67 IPR001005 -
Stsc241839g00009 316 CDD SANT 76 115 IPR001005 -
Stsc241839g00009 316 PANTHER TRANSCRIPTION FACTOR DUO1 12 314 - -
Stsc241839g00009 316 SMART sant 19 69 IPR001005 -
Stsc241839g00009 316 SMART sant 73 121 IPR001005 -
Stsc241839g00009 316 Gene3D - 75 147 - -
Stsc241839g00009 316 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Stsc241839g00009 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 123 IPR017930 -
Stsc241839g00009 316 MobiDBLite consensus disorder prediction 151 172 - -
Stsc241839g00009 316 FunFam Transcription factor GAMYB 75 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241839g00009 Stsc-Chr241839 43704 44918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241839g00009 18 314 MYB Transcription Factor Family AT3G60460 51.307 1.82e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241839g00009 Myb_DNA-bind_6 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241839g00009 K09422 - gmx:100818656 371.318