Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241838g00013 ATGGTGGATGATCAGATGGATAAGGCATCAATCATAAAGGATGCAATTGAGTACATAGAGCACTTGCACGAACAAGAGAGGAGGATCCAAGATGAGATCATGGAGCTTGAATCTGCTAGCAAGCTCAAGAATCCATTAATTATTGAACCACCACCTGTCTCCTATCATTTTCACCAGGATCTTCCAGTTTTGCTCAGGTCTAAGAAGAACAGACCTGATACCCTTCTCTTTGATACCTCAGCTTCTTCTTCTTCCTCAAGGAATAACACCTATTTCCCCATTGAACTCATTGATCTGAGGGTAACATACAAGGGAGAGAAGATATTTGTAATTAGCTTGACATGCAGCAAAAGGACAGACACAATGGTGAAAATCTGTGAAGTCTTTGAATCTTTGAAGCTTAAGATCATCACTGCTAATATTACTTCTTTCTCGGGAACACTCTTGAAGACACTCTTTGTTGAGGCAGATGAAGAAGAAAAAGATAATCTGCAGATAAGGATCCAGACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 555 0.4072 MVDDQMDKASIIKDAIEYIEHLHEQERRIQDEIMELESASKLKNPLIIEPPPVSYHFHQDLPVLLRSKKNRPDTLLFDTSASSSSSRNNTYFPIELIDLRVTYKGEKIFVISLTCSKRTDTMVKICEVFESLKLKIITANITSFSGTLLKTLFVEADEEEKDNLQIRIQTAIAALNDPQSPMSI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241838g00013 184 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 167 - -
Stsc241838g00013 184 Coils Coil 154 174 - -
Stsc241838g00013 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 38 IPR036638 GO:0046983
Stsc241838g00013 184 SUPERFAMILY ACT-like 106 169 IPR045865 -
Stsc241838g00013 184 Coils Coil 19 42 - -
Stsc241838g00013 184 Gene3D - 2 44 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241838g00013 Stsc-Chr241838 69379 71662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241838g00013 5 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 48.344 2.90e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241838g00013 - - gmx:100803916 235.343