Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241838g00012 ATGGAGAACTGTGAGGATTACAAGAATTACTGGGAGACCAACATGTTCCTCGAAACCCAAGAGTTGGACACCAGCTGGCCATTCGATGATGCCTTCTCCGGCGGCTACTACGATTCGAGCTCGCCGGACGGCGGAGCTTCATCGGCGGCATCTAAGAACATTGTCTCGGAGAGGAATAGGAGGAAGAAGCTCAACGAAAGGCTCTTTGCACTTAGGGCAGTTGTCCCCAACATCACCAAGATGGATAAGGCATCAATCATAAAGGATGCAATTGAGTACATAGAGCACTTGCACGAACAAGAGAGGAGGATCCAAGATGAGATCATGGAGCTTGAATCTGCTAGCAAGCTCAAGAATCCATTAATTATTGAACCACCACCTGTCTCCTATCATTTTCACCAGGATCTTCCAGTTTTGCTCAGGTCTAAGAAGAACAGACCTGATACCCTTCTCTTTGATACCTCAGCTTCTTCTTCTTCCTCAAGGAATAACACCTATTTCCCCATTGAACTCATTGATCTGAGGGTAACATACAAGGGAGAGAAGATATTTGTAATTAGCTTGACATGCAGCAAAAGGACAGACACAATGGTGAAAATCTGTGAAGTCTTTGAATCTTTGAAGCTTAAGATCATCACTGCTAATATTACTTCTTTCTCGGGAACACTCTTGAAGACACTCTTTGTTGAGGCAGATGAAGAAGAAAAAGATAATCTGCAGATAAGGATCCAGACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 780 0.4423 MENCEDYKNYWETNMFLETQELDTSWPFDDAFSGGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIEYIEHLHEQERRIQDEIMELESASKLKNPLIIEPPPVSYHFHQDLPVLLRSKKNRPDTLLFDTSASSSSSRNNTYFPIELIDLRVTYKGEKIFVISLTCSKRTDTMVKICEVFESLKLKIITANITSFSGTLLKTLFVEADEEEKDNLQIRIQTAIAALNDPQSPMSI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241838g00012 259 Coils Coil 94 117 - -
Stsc241838g00012 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Stsc241838g00012 259 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Stsc241838g00012 259 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Stsc241838g00012 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Stsc241838g00012 259 SMART finulus 54 103 IPR011598 GO:0046983
Stsc241838g00012 259 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 242 - -
Stsc241838g00012 259 Gene3D - 46 114 IPR036638 GO:0046983
Stsc241838g00012 259 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241838g00012 Stsc-Chr241838 68892 71665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241838g00012 5 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 54.626 5.60e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241838g00012 HLH 6.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241838g00012 - - zju:107421731 328.176