Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241838g00005 ATGAGTAGTTATGGAAAGGAAGACATAGAAGCTCCTCGGAGCTCCGGTGACATCATCGACGACGGAGGCTCGTCTTCCAGTCCCTTTGATATTGCCAGAACCAAAGATGCTTCCGTTCAACGCCTCAAGCGTTGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGCCGATTTCGCTACACCTTGGACTTGAAGAAAGAAGAAGAAAAGGAGCAAGTTCTGAGAAAGATTAGGGGGCATGTTCAAGTCATCAGAGCAGCGTATCTTTTCAAGGAGGCTGCAAATAAATTGAATAGTGAATTAGGAATTGTCCCACATCCTCCAAGCTCCACTGGAGAATTTCAAATTGGGGAAGAGCTACTTTCTTCAATTGCAAGGGATCATAATACTGCTGCTCTGCAAGAAAAAGGAGGGGTTGATGGGATAGCAAGTTTGTTAAAGACCAATTTAGAAAAGGGGATTGAAGGTGATGAGGCTGACTTGATTAGGCGGAGGAGCGCTTTTGGCTCGAACAACTATCCTCGAAAGAAAGGAAGAAGTTTCTTGATGTTTGTTTGGGATGCATGCAAGGATCTGACTTTGATTATTTTAATGGTAGCTGCTGCGGCTTCATTAGTACTGGGCATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGGGACCTAAACGAGGAGAAGAGAAACATACGTTTGGAGGTAATTAGAGGTGGTAGAAGAGTTGAGATCTCAATCTATGACATTGTTGTTGGTGATGTCATACCCCTTAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATCGTCGGTCACTCTCTTGCAGTTGATGAATCTAGTATGACAGGGGAGAGCAATATTGTTGATAAGAATTCTAAGAACCCTTTTCTGATATCTGGTTGTAAAGTTGCAGATGGCAGTGGTGTTATGCTGGTAACGGCTGTTGGTATTAATACCGAATGGGGGCTTCTAATGGCTAACATTTCAGAAGACAATGGTGAAGAGACACCTTTGCAGGTACGCTTGAATGGTCTTGCCACCTTCATTGGTATAATTGGGCTCTCTGTTGCTGTTGTCGTTCTGGTTGTGCTACTGGCCAGGTATTTCTCTGGGCATACTAAAGATCCAAATGGAAATATTCAATTTATAGCAGGCAAGACTAAACTCAGTAAGGCAATTGATGGAGCAATTAAGATAGTCACTGTTGCGGTCACAATTGTAGTGGTTGCAGTACCTGAAGGACTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCTATGAGAAAAATGATGGCAGATAAAGCTTTGGTTCGTAGGCTTTCTGCCTGTGAGACTATGGGCTCAGCCACAATCATTTGCAGTGATAAGACCGGAACATTGACTATGAATCAGATGACTGTGGTTGAAGCTCTCATCGGTGGGGAGAAGATTGATCCTCCTCACAAGAAGTCGGGGCTCTCTCCTATACTCTGCTCGTTGCTGATTGAAGGGGTTGCACAGAACACCAATGGTAGTGTTTTTGTACCTGAGGGTGGTAACGATGTTGAGGTTACTGGATCACCAACTGAGAAGGCAATTTTACATTGGGCTGTTCAGCTTGGGATGAATTTTAAAGCTGCTAGATCAGAATCATCAATTATTCATGTCTTCCCATTCAATTCGGAAAAGAAACGAGGCGGGGTTGCAGTACAGACGACTGAACCTGTAGTCCATATACATTGGAAAGGGGCTGCTGAGATAGTCTTAGGCTGCTGTACACAGTATATGGATGTAAATGATCAGTTGATGAAGATGGATGAAGAAAAGATGAAAGAATTTAGAGAAGTTATTGAAGATATGGCATCTCGTAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAAAGTTCCAACTGGTGAAGACCTTGCTCACTGGTCATTACCTGAGGATAATCTCATCTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTGAAAGATGCAGTGAAGCTTTGCCAGAAAGCTGGCGTTAAGGTTATGGGACGATCGTCTCCAAACGATAAGCTTTTGCTCGTGCAAGCACTGAGGAGGAAGCAGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCAGCCTTACATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCGAAAGAGAGCTCTGATATCATTATATTGGATGATAATTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGAGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTGAATATAGCAGCTCTTGTTATAAATGTTATTGCTGCATTTTCATCGGGTGATGTACCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACACTTGGAGCTCTAGCCTTGGCAACTGAACCACCAACTGATCATCTGATGTATCGTGATCCAATGGGTCGAAGAGAACCTCTTATATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATTTACCAAGTGTCTGTCCTGCTTATACTCAATTTCCGAGGCATCTCCATACTGAAATTGACACACAAGTCCAGTGACAATGCACTCAAAGTGAAGGACACTTTGATATTCAATGCCTTTGTTCTCTGTCAAGTTTTTAATGAATTTAATGCTCGTAAGCCGGATGAGTTCAATATATTCAAGGGAGTCACAAAAAACTATCTCTTTATGGGGATAGTGGGATTAACTGTTGTGCTTCAGATCATTATCATTGAATTTCTCGGAAAGTTCACAAAAACAGTCAAGCTAACTTGGCAACAGTGGCTCATTTGTGTTATAATTGGATTTATCAGCTGGCCTCTTGCTGTGATTGGAAAACTGATACCAGTACCAAAAAAGCAGCTCAGTGATTTTTTTAAGAATTTTGTTAACCGTGTTCGAAGTTGTTTAGGTCTACGACCAAAACTGTGA 3066 0.4207 MSSYGKEDIEAPRSSGDIIDDGGSSSSPFDIARTKDASVQRLKRWRQAALVLNASRRFRYTLDLKKEEEKEQVLRKIRGHVQVIRAAYLFKEAANKLNSELGIVPHPPSSTGEFQIGEELLSSIARDHNTAALQEKGGVDGIASLLKTNLEKGIEGDEADLIRRRSAFGSNNYPRKKGRSFLMFVWDACKDLTLIILMVAAAASLVLGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIRLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILIVGHSLAVDESSMTGESNIVDKNSKNPFLISGCKVADGSGVMLVTAVGINTEWGLLMANISEDNGEETPLQVRLNGLATFIGIIGLSVAVVVLVVLLARYFSGHTKDPNGNIQFIAGKTKLSKAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATIICSDKTGTLTMNQMTVVEALIGGEKIDPPHKKSGLSPILCSLLIEGVAQNTNGSVFVPEGGNDVEVTGSPTEKAILHWAVQLGMNFKAARSESSIIHVFPFNSEKKRGGVAVQTTEPVVHIHWKGAAEIVLGCCTQYMDVNDQLMKMDEEKMKEFREVIEDMASRSLRCVAIAYRLYEMEKVPTGEDLAHWSLPEDNLILLAIVGLKDPCRPGVKDAVKLCQKAGVKVMGRSSPNDKLLLVQALRRKQHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNIAALVINVIAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMYRDPMGRREPLISNIMWRNLLIQAIYQVSVLLILNFRGISILKLTHKSSDNALKVKDTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIIIIEFLGKFTKTVKLTWQQWLICVIIGFISWPLAVIGKLIPVPKKQLSDFFKNFVNRVRSCLGLRPKL 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241838g00005 1021 NCBIfam calcium-translocating P-type ATPase, PMCA-type 128 705 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 235 355 - -
Stsc241838g00005 1021 Pfam E1-E2 ATPase 257 457 - -
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 748 997 - -
Stsc241838g00005 1021 Gene3D - 187 475 - -
Stsc241838g00005 1021 PRINTS Sodium/potassium-transporting ATPase signature 222 242 - -
Stsc241838g00005 1021 PRINTS Sodium/potassium-transporting ATPase signature 598 616 - -
Stsc241838g00005 1021 PRINTS Sodium/potassium-transporting ATPase signature 472 493 - -
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 9 plasma membrane-type 333 503 - -
Stsc241838g00005 1021 Gene3D - 37 93 - -
Stsc241838g00005 1021 SUPERFAMILY Calcium ATPase, transduction domain A 257 351 IPR008250 -
Stsc241838g00005 1021 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Stsc241838g00005 1021 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Stsc241838g00005 1021 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Stsc241838g00005 1021 PRINTS P-type cation-transporting ATPase superfamily signature 479 493 - -
Stsc241838g00005 1021 Gene3D - 476 706 IPR023214 -
Stsc241838g00005 1021 Pfam Ca2+-ATPase N terminal autoinhibitory domain 27 69 IPR024750 GO:0005516
Stsc241838g00005 1021 Gene3D - 489 686 IPR023299 GO:0000166
Stsc241838g00005 1021 PANTHER CATION TRANSPORTING ATPASE 100 705 - -
Stsc241838g00005 1021 SUPERFAMILY HAD-like 477 836 IPR036412 -
Stsc241838g00005 1021 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 486 683 IPR023299 GO:0000166
Stsc241838g00005 1021 Pfam Cation transporting ATPase, C-terminus 816 993 IPR006068 -
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 187 244 - -
Stsc241838g00005 1021 MobiDBLite consensus disorder prediction 1 32 - -
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 489 686 - -
Stsc241838g00005 1021 NCBIfam HAD-IC family P-type ATPase 419 502 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241838g00005 1021 NCBIfam HAD-IC family P-type ATPase 683 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241838g00005 1021 SUPERFAMILY Calcium ATPase, transmembrane domain M 136 995 IPR023298 -
Stsc241838g00005 1021 Pfam Cation transporter/ATPase, N-terminus 136 204 IPR004014 -
Stsc241838g00005 1021 ProSitePatterns E1-E2 ATPases phosphorylation site. 481 487 IPR018303 -
Stsc241838g00005 1021 Gene3D - 743 998 - -
Stsc241838g00005 1021 FunFam Calcium-transporting ATPase 37 93 - -
Stsc241838g00005 1021 Gene3D - 161 355 - -
Stsc241838g00005 1021 Pfam Cation transport ATPase (P-type) 538 613 - -
Stsc241838g00005 1021 SMART Cation_ATPase_N_a_2 135 209 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241838g00005 Stsc-Chr241838 12792 22286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241838g00005 11 1012 Primary Pumps ATPases AT4G29900 68.263 0.0 1436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241838g00005 K01537 - gmx:100790157 1514.59