Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241836g00012 ATGTACATAGGAACTTCCATGAGAAGGTCTTTCAAGGATTCCTTGAAAGTCCTTGAAGCTGATATTCAGCACGCCAATACCCTGGCATCAGAGTTTCCAAGGGAATGTGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACATTTGTTTCTTTTCTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCACTTGGCTTGTTAAGAATCCTAATTTACAAGGTATATGTGGATGGAACAGCTACCATGTCTACCCATGAGAGGAAAGCTAGTATTAGAGAATTCTATGCGGTAATTTATCCGTCTTTGTTACAACTTCAGCAAGGGGTTACAGATTCGGAGGATAAGAAACAGAAGGCTGTTTGTATGGAGAGGTATCGCAAAAGAGACGATGAGGATCATAGACATGATTCTGATATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAGTGAATAGTAAGATTGTGTTGCCTAACTGCATTCATGCCATGTGCCTGAAATGTTACCGCGAATGGAGAACAAGGTCCCAATCGTGCCCCTTTTGTCGCGATAGTCTGAAGAGAGTGAACTCATGCGATCTCTGGGTGATTATGGATAGCAGGGATGTAGTGGACATGGAAACAGTGACAAGGGAGGATCTAAAGAGGCTTTTCATGTACATTGATAAGTTGCCCTTGATCATTCCAGACTCTCTTTTTGATCCCTATGACTCTCAACTAAGATGA 747 0.4244 MYIGTSMRRSFKDSLKVLEADIQHANTLASEFPRECDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTATMSTHERKASIREFYAVIYPSLLQLQQGVTDSEDKKQKAVCMERYRKRDDEDHRHDSDIDIEREEECGICMEVNSKIVLPNCIHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVIMDSRDVVDMETVTREDLKRLFMYIDKLPLIIPDSLFDPYDSQLR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241836g00012 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Stsc241836g00012 248 SMART ring_2 152 189 IPR001841 -
Stsc241836g00012 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 211 IPR013083 -
Stsc241836g00012 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Stsc241836g00012 248 SUPERFAMILY RING/U-box 138 195 - -
Stsc241836g00012 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Stsc241836g00012 248 FunFam RING/U-box superfamily protein 120 199 - -
Stsc241836g00012 248 PANTHER RING FINGER PROTEIN 41, 151 9 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241836g00012 Stsc-Chr241836 64405 66820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241836g00012 151 230 C3H Transcription Factor Family AT2G20030 33.333 8.12e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241836g00012 K25840 - pvy:116126787 428.328