Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241836g00009 ATGAAGACGATGAAAGAGTTTTTCTGGATGCACTACTACTCTCTTTGGTGGTCACCATCACTATCCCCACGGTTACCCATGCTTTTCAACTCTAAATCTCAAACTGAATCGGGATCCAGAAAGAGGCACCGCATACTAATCAATTCTAATGACGTCGCCACAAAACGAAACAAGATCAACGAAGAGGAGGACAAAGGAGTTGAGTCTTCGTTGATTTCGTCGTTCGTGTGCGAAATCTGCATTGAGACGAAACCTGAAGCCGAATCGTTTTCAATAAGAGGATGTAACCACTCATATTGTAGGGATTGCGTGGTGAAGTACGTTGGCTCGAAGCTCGACGAGAACGTGATCAATATCCGGTGTCCGGTGCCCCGGTGCAGTGGTCTGTTGGAAAGCGAGGATTGCCGCGAGGTTCTGCCGAAGTTGGTATTTGATCGGTGGGAGAACTCATTGTGCAACGCTGCTGTTATCGAGAACGAGAATGAGAGATTCATGTATTGCCCCTTCAGGGATTGCTCTGCCCTTATAATCATGGATGATTCTCCAACGTTACCGAGGAAATCAGAGTGCCCTAACTGTAAGAGGGAGATCTGCGTGGCGTGCGTGGCAGTTTGGCATGATGGGATTACGTGCGAGGAATTTGGGAGGATTGTTAATGAAGATAGAGTTGCGATGGAGTTAGCAGCGAGGAACATGTGGAGGAGGTGCCCAAAGTGCAGGTTTTATGTTGAGAAGAAAAGTTTTACCTGCAGTAGAATACGTTGCAGGTGTGGATATTTATTCTGTTACGAGTGTGGCGGTTCCCCCTGTGTCTGTCTCCTTGACATGACCACCACTTTCCCCGGCCGTATTGTAAGATTGTTTCTATTGACTTAG 876 0.4715 MKTMKEFFWMHYYSLWWSPSLSPRLPMLFNSKSQTESGSRKRHRILINSNDVATKRNKINEEEDKGVESSLISSFVCEICIETKPEAESFSIRGCNHSYCRDCVVKYVGSKLDENVINIRCPVPRCSGLLESEDCREVLPKLVFDRWENSLCNAAVIENENERFMYCPFRDCSALIIMDDSPTLPRKSECPNCKREICVACVAVWHDGITCEEFGRIVNEDRVAMELAARNMWRRCPKCRFYVEKKSFTCSRIRCRCGYLFCYECGGSPCVCLLDMTTTFPGRIVRLFLLT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241836g00009 291 FunFam RBR-type E3 ubiquitin transferase 72 158 - -
Stsc241836g00009 291 Pfam IBR domain, a half RING-finger domain 146 211 IPR002867 GO:0008270
Stsc241836g00009 291 Pfam IBR domain, a half RING-finger domain 228 267 IPR002867 GO:0008270
Stsc241836g00009 291 SUPERFAMILY RING/U-box 74 154 - -
Stsc241836g00009 291 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Stsc241836g00009 291 Gene3D - 208 272 - -
Stsc241836g00009 291 SUPERFAMILY RING/U-box 221 268 - -
Stsc241836g00009 291 CDD Rcat_RBR_unk 232 266 - -
Stsc241836g00009 291 SUPERFAMILY RING/U-box 159 214 - -
Stsc241836g00009 291 ProSiteProfiles Zinc finger RING-type profile. 77 125 IPR001841 -
Stsc241836g00009 291 Pfam Zinc finger, C3HC4 type (RING finger) 77 122 IPR018957 GO:0046872
Stsc241836g00009 291 ProSiteProfiles TRIAD supradomain profile. 73 287 IPR044066 -
Stsc241836g00009 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Stsc241836g00009 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 268 IPR031127 GO:0004842|GO:0016567
Stsc241836g00009 291 SMART ibrneu5 145 211 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241836g00009 Stsc-Chr241836 42143 43018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241836g00009 77 267 C3H Transcription Factor Family AT2G19610 26.667 6.34e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241836g00009 K11975 - vvi:100252570 240.736