Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241836g00005 ATGGCCATTAAGACTTGTGGCTGCTTTGGAGCCTCAGCTACAAAGAAGAAAAAAAGCACTTCTTCTCATAGTCCCAATGAAATTGATGGCTATCCCTTAGTCAATGTTAGGCAATTCTCTGATAAGGAACTGAGATTGGCAACTGATAATTATCATTCAAGCAGTAAGATAGGAAGAGGAGGCTTTGGAACTGTTTTCCAGGGAACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAAGGAGTTCGTGAATTCTTGACTGAGATTAAGACATTATCAAATGTTAGACATCCAAACCTTGTTGAGTTGATTGGATTCAGTATTCAAGGAGCTAGCCGCACATTAGTCTATGAGTATGTGGAAAATGGCAACCTTGATTGTGCATTACTTGGCACAAGGACTAAGAGAATTAACCTAGATTGGAGAAAAAGATCTGCTATTTGCATAGGTACTGCTAAGGGTCTTGCATTTCTTCATGAGGAAATTGTGCCACACATTGTTCATAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAGATTATAATCCAAAAATTGGTGATTTTGGATTGGCGAAATTATTCCCGGACGACATTACTCATATCAGCACGAAAATAGCCGGAACAACGGGTTACTTAGCACCAGAATATGCATTAGGTGGGCAGTTAACCATGAAAGCTGATATATACAGTTTTGGGGTTCTTGTGCTTGAAATCATTAGCGGCATACGCAGCTCAAGGAGTAGCTGTGGAGATTCCAACAAACTCCTCTTGGAATGGGCATGGCAACTTCATGAAGAGGGTAAACTTTTGGACCTTGTGGATCCAGAGATGGAAGAGTTTCCAGAGAAAGAGGTGATGAAGTACATGAAGGTTGCATTGTTCTGCACACAGTCAGCAGCAAGCAGGAGGCCATTGATGACACAAGTGGTTGACATGCTCTCAAAGGAAATCCAGCTCAATGAGAGCCAATTACAACCACCAGGGTTCTTCATGGATTCAAATGGTGAATCCTCTCGGAACAAGTCAAATTCTAACTCTGCACCTCCTAATGATAGCTCAAGTCACAGTATTACTCAGGTGGCCCCTCGATGA 1116 0.4176 MAIKTCGCFGASATKKKKSTSSHSPNEIDGYPLVNVRQFSDKELRLATDNYHSSSKIGRGGFGTVFQGTLKDGRQVAVKTLSVGSKQGVREFLTEIKTLSNVRHPNLVELIGFSIQGASRTLVYEYVENGNLDCALLGTRTKRINLDWRKRSAICIGTAKGLAFLHEEIVPHIVHRDIKASNVLLDKDYNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTMKADIYSFGVLVLEIISGIRSSRSSCGDSNKLLLEWAWQLHEEGKLLDLVDPEMEEFPEKEVMKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNESQLQPPGFFMDSNGESSRNKSNSNSAPPNDSSSHSITQVAPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241836g00005 371 ProSiteProfiles Protein kinase domain profile. 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241836g00005 371 FunFam serine/threonine-protein kinase PBS1-like 14 126 - -
Stsc241836g00005 371 Gene3D Transferase(Phosphotransferase) domain 1 127 334 - -
Stsc241836g00005 371 Pfam Protein tyrosine and serine/threonine kinase 54 321 IPR001245 GO:0004672|GO:0006468
Stsc241836g00005 371 MobiDBLite consensus disorder prediction 332 371 - -
Stsc241836g00005 371 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Stsc241836g00005 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 360 - -
Stsc241836g00005 371 SUPERFAMILY Protein kinase-like (PK-like) 35 351 IPR011009 -
Stsc241836g00005 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 127 333 - -
Stsc241836g00005 371 PIRSF ILK 10 332 - -
Stsc241836g00005 371 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Stsc241836g00005 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Stsc241836g00005 371 CDD STKc_IRAK 57 323 - -
Stsc241836g00005 371 SMART serkin_6 51 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241836g00005 Stsc-Chr241836 15044 17392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241836g00005 39 370 Receptor kinase-like Gene Family AT1G56120 48.193 2.26e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241836g00005 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241836g00005 - - gmx:100775344 531.561