Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241835g00001 ATGGCGATGTCATTTCTCTATGCAGCAACAATAATTGTATCAACCCTCCTATTCCTTTATGTTGTTCATCGTCATAGAATAAATTCTTGTAGAACCCCTCTCTCCATAGATTGGCCAATCCTTGGCATGTTACCACAAGTCCTTTGCAATTTGTCCCAACTCCATGATTTTGTAACAGATGTTTTGAGAGAAAAAGGTGGCACCGGTGAATTCATGGGGCCATGGTTCACCAACTTGAACTACATGGTCACTAGTGACCCCATCAATGTTCATCACATTTTCAGCAAAAACTTTGACAATTATGTCAAGGGCCCTGAGTTTCAAGAGATGTTTTACCCTTTCGGAGACGGTTTCATCAATGTAGATTCCGAAAAATGGAAGTACCAAAGGACCTTGCTCCATTCCTTGTTCCGGGAAAAGAGTTTCGAGGCGAGGACGGAGAAGATCACTCAAAAGTTGGTCCAGAATAGCTTGCTTCCGATACTTGATCATGCGTGTTTGGATGGAAAGGTTTTGGATCTTCAACAAGTTTTTAGTCGATTAATGTTTGAAGAGGCATGCCTCATGGTTTTAGGATATGATCCTGATAATCTCTCAACTGAATTTTCGTTGGCCAAAGTTGAGACGGCTTTCGATGAAGTTCAGGAGTCTCTGTTCTGTAGGCACTATGTGCCGAGAAGTGTTTGGAAGTTTCAAGAATGGCTTCAAATTGGTGAGGAGAAGAAGTTGACAAAAGCATGTAAACTTTTTGACCAATTTCTGTTTTCTTGCATCGCAAGAAAGCGCCAAGAGTTAATAATAAGCAAATGCAACGAAAGCAGTGATGATGGCTTGCTTAGTGCTATCATGATGAGTGGCGAAAACGGTAGAAAATTGTTGTATGAAGATAAATTTTTAAGAGATATTACTTTCAATCTTTTTGCGGCTGGAAGAGATACCTTAATTTCGAGTCTTATATGGTTCTTCTGGCTTATTGCAACACACCCATTAGTCGAGGCCAAGATTCTTGAGGAAATAGAAGAAAATTTCGGTGCTACTGATAGAGAGAAACGCAATATTTTAGGGATAAAAGACGTGAAGAAGCTAGTTTACCTACATGCCGCTCTATGTGAAGGTTTGAGATTATTTCCACCTGTTCCTATCGAACGTAAGCAACCATTGAAGCATGATACACTTCCAAGTGGTCATCATGTTAATCCAAATACCACTATTTTGTTGTTTATTTATGCAATGGGAAGGTTTGAAGAGGTATGGGGAAAAGATTGCTCAGAGTTCAAGCCAGAGAGATGGATTTCGAATAAAGGAGAAATAGTGCAC 1317 0.3994 MAMSFLYAATIIVSTLLFLYVVHRHRINSCRTPLSIDWPILGMLPQVLCNLSQLHDFVTDVLREKGGTGEFMGPWFTNLNYMVTSDPINVHHIFSKNFDNYVKGPEFQEMFYPFGDGFINVDSEKWKYQRTLLHSLFREKSFEARTEKITQKLVQNSLLPILDHACLDGKVLDLQQVFSRLMFEEACLMVLGYDPDNLSTEFSLAKVETAFDEVQESLFCRHYVPRSVWKFQEWLQIGEEKKLTKACKLFDQFLFSCIARKRQELIISKCNESSDDGLLSAIMMSGENGRKLLYEDKFLRDITFNLFAAGRDTLISSLIWFFWLIATHPLVEAKILEEIEENFGATDREKRNILGIKDVKKLVYLHAALCEGLRLFPPVPIERKQPLKHDTLPSGHHVNPNTTILLFIYAMGRFEEVWGKDCSEFKPERWISNKGEIVH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241835g00001 439 PANTHER CYTOCHROME P450 25 434 - -
Stsc241835g00001 439 Pfam Cytochrome P450 37 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241835g00001 439 SUPERFAMILY Cytochrome P450 20 436 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241835g00001 439 Gene3D Cytochrome P450 23 439 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241835g00001 439 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241835g00001 439 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241835g00001 439 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241835g00001 Stsc-Chr241835 5752 7068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241835g00001 37 439 Cytochrome P450 AT1G47620 43.171 3.03e-118 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241835g00001 - - gmx:100780625 536.569