Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241833g00008 ATGGATCCTATGGAGGCTGGTGGCAGTAGCAACGGTAGCAGCAGCGGAGCAGCTGTTCCACCACCGGCACCGCACACAATAACTAAGTGGTCCACAATAAAGAAACAACTGCATGAGCCTCCACTTCCGGTGGAGGAACAGTTGCAAGTTTTATGGGAAGTCCACAAGAACGAAACCAAGAAAAAGAAGCCCGCTATTATTCCTCTTGGAAGCGTCCTGAGACAAATGAAGGCTGATGATGACGTCAGAAGGGTATCGGACGAGGCGCTGCAGGTCTTCAGCCAGGCCGGTGAGATGTTCGCCCAAGAACTCGCCCTGCGTGCCTGGAAACATGCTCAGGATGATAAAAGGTTGGAGATTATGGAGAAAGATTTCACCGCGGCACGAGCGGATTCTACAATATATGAATTCTTGGACTCTGTTGAAACTGACCTTGATACTGATACTGAAACTGAAACGGATAGTTCTACTACTGATAGTGAATATCAATGGTGTTAG 498 0.4839 MDPMEAGGSSNGSSSGAAVPPPAPHTITKWSTIKKQLHEPPLPVEEQLQVLWEVHKNETKKKKPAIIPLGSVLRQMKADDDVRRVSDEALQVFSQAGEMFAQELALRAWKHAQDDKRLEIMEKDFTAARADSTIYEFLDSVETDLDTDTETETDSSTTDSEYQWC 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241833g00008 165 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 44 146 - -
Stsc241833g00008 165 Gene3D Histone, subunit A 30 142 IPR009072 GO:0046982
Stsc241833g00008 165 MobiDBLite consensus disorder prediction 1 26 - -
Stsc241833g00008 165 MobiDBLite consensus disorder prediction 145 165 - -
Stsc241833g00008 165 SUPERFAMILY Histone-fold 58 141 IPR009072 GO:0046982
Stsc241833g00008 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 67 126 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241833g00008 Stsc-Chr241833 44106 44603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241833g00008 51 138 CCAAT-HAP5 Transcription Factor Family AT1G54830 40.659 1.10e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc241833g00008 CBFD_NFYB_HMF 9e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241833g00008 K08066 - nnu:104599550 80.1073