Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241833g00006 ATGGATCCTCACCAAGGTCATAACCAGAACTCATCCATGGGAGTTGGTGGTAGTGGAGCACAATTTCCCTACAGTTCCAATCCATACCAGCCCAACCAAATGACCGGCTCACCCGGGATGGTTGTTCCACCAATTGGGAACATTCAATCTGCTGGTCAGCCTGCTGCTGGAGCTCAACTAGGCCAACATCAACTTGCTTATCAACATATTCATCAGCAACAGCAACAGCAGCAACAGATGCAACTTCAGCAACAGCTTCAGTCCTTTTGGGCTAACCAGTACCAAGAAATTGAAAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTAAGGATGATATCGGCGGAGGCGCCGGTTATATTTGCAAGGGCATGCGAAATGTTCATCCTAGAGTTGACCTTGCGATCCTGGAACCACACTGAGGAGAACAAGAGGAGGACCCTTCAAAAGAATGACATTGCTGCTGCTATTACAAGAACCGATATCTTCGATTTCTTGGTTGACATTGTCCCCCGGGAGGATCTGAAAGATGAAGTGCTTGCTTCAGTCCCAGGAGGAACAATGGCTGTTCCAGGGCCTGCAGATTCCATTCCCTACTGCTATATGCCACCACAGCATGCACAAGTCGGAGCTGCCGGAGTGATGATGGCTAATCCTGCAATGGACCCGAGTTTATATGCTCAACAGCCTCATCCTTACATGGCTCCGCAGATGTGGCCACAGCCGCCGGAGCAACAACAGTCGCCTTCAGACCAGTAG 798 0.4937 MDPHQGHNQNSSMGVGGSGAQFPYSSNPYQPNQMTGSPGMVVPPIGNIQSAGQPAAGAQLGQHQLAYQHIHQQQQQQQQMQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASVPGGTMAVPGPADSIPYCYMPPQHAQVGAAGVMMANPAMDPSLYAQQPHPYMAPQMWPQPPEQQQSPSDQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241833g00006 265 MobiDBLite consensus disorder prediction 1 37 - -
Stsc241833g00006 265 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 107 170 IPR003958 -
Stsc241833g00006 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 74 214 - -
Stsc241833g00006 265 SUPERFAMILY Histone-fold 72 179 IPR009072 GO:0046982
Stsc241833g00006 265 MobiDBLite consensus disorder prediction 240 265 - -
Stsc241833g00006 265 MobiDBLite consensus disorder prediction 1 39 - -
Stsc241833g00006 265 Gene3D Histone, subunit A 67 185 IPR009072 GO:0046982
Stsc241833g00006 265 FunFam Nuclear transcription factor Y subunit gamma 70 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241833g00006 Stsc-Chr241833 32653 34767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241833g00006 17 264 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.484 4.52e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc241833g00006 CBFD_NFYB_HMF 6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241833g00006 K08066 - gmx:100527803 362.459