Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241833g00004 ATGAAGCATTTACTTGAAAAGGGTTATGCTGTCAATGTTAGAGACCCAAGAGAGTTGAACGTTTTCAGAGTAGAGTTAACAATCGAAGATTTTGTTGGCCCTATAGCAGCTGTTGGGGTTAGTGCATCTTGTCCCAGAACTACTCATCTTTGGCTTAAACAACGCATAACTAGGAGATTTACCCATTTAATCACACCCTTCACAATCTCCTTCCATGTTGGATTTGGGTTGTCCCTTTCCCCTTCTGTAATCTACTTGCATTCTCTCCAAGTTCTGCAGTATTCTCCTGCTCCTCTCCCAATCAGTCTGGTTGATACTAATTGTAAGAACCTTTATCTAGAGATTGAGACTAAGTTTGTAGATAACTGTTCTCGTGTAGTCAAGAATGGGGTTGAGATTCCCATAGTCAGATTGGCCATTATAGAAGCAAAGCCTCTAATCCTCTATTTGAGTGTGGACCTTTTTGCAAAATCAATTTATGGTGGAGTTTTGATGGATGGTTGTGGCTTCACCATTGATGCTTCTCAGTATGGTAATGAGGGGAGATTCATCAACCACAGCTGTTCTCCAAATCTTTATGCTCATAACGTGTTCTATGATCATCATGAAAAAAGATACCTCAAATATATGTTCTTTGCTGCTGAGAACATTCCTTCTCCGCAAGGGCTGACTTAA 675 0.403 MKHLLEKGYAVNVRDPRELNVFRVELTIEDFVGPIAAVGVSASCPRTTHLWLKQRITRRFTHLITPFTISFHVGFGLSLSPSVIYLHSLQVLQYSPAPLPISLVDTNCKNLYLEIETKFVDNCSRVVKNGVEIPIVRLAIIEAKPLILYLSVDLFAKSIYGGVLMDGCGFTIDASQYGNEGRFINHSCSPNLYAHNVFYDHHEKRYLKYMFFAAENIPSPQGLT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241833g00004 224 ProSiteProfiles SET domain profile. 99 224 IPR001214 GO:0005515
Stsc241833g00004 224 Pfam SET domain 170 218 IPR001214 GO:0005515
Stsc241833g00004 224 SUPERFAMILY SET domain 162 219 IPR046341 -
Stsc241833g00004 224 Gene3D SET domain 149 224 IPR046341 -
Stsc241833g00004 224 SMART set_7 113 224 IPR001214 GO:0005515
Stsc241833g00004 224 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 169 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241833g00004 Stsc-Chr241833 24706 26884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241833g00004 170 224 EF-hand Containing Proteins AT5G13960 49.091 5.10e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241833g00004 SET 5.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241833g00004 K11420 - pvy:116128387 92.0485