LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241832g00001	ATGATAGAGGAATACCAGGGGTTTGAAAGGCTTGAAGGTTCTCAAAGACTTAGAATTTTTTTAGTTCCTTTGACTGAATCTGAAGAGACACCATCATCCGAAGTGAGCATGATTCAGCAAAGTGATCCCGACTACCAATATGTTGTTGCCGTAAATGGTATAGCAGATCCCAGTTCAAGGAAAAGCATTGGTGGGAAGAGTTTGACCAATGAAGCAAGTCAGTTCGCTCCAGTTTTTCAGAAAGTTTCTCCAAATCCCTCTTCTGCCTTTGAGGCCAGGGGATCTGTTAATTCTTTAAATGGAGATGGGTTTTTGAATGATTCCCTGAGTCTGCCAAGATGCTCATCAGTTTCCCCTATTCCTATTCAGGTATCAGGCTCTAGTGCAGGTTATGTGCAATTTCTTGGTAATGACCCGTTTCGGGGAAGTACTGAAAGCAATGTGCCATTTGTTACTGCTCAGCTACCCCCTGAGAACTCCAGCACAGCCATCGCTGATTGGCAATACCCTCAGCATGGAGCTGTTGATCGGTCCAAGATGCCCAATGGACAGCATTTTGGCAATTACAATCTTGGCAAGGAATTTGTGACACCAGTACATGTTAATCCACGTGATGGTCGTGAGGATCAATTATTCAATGAAAGACTGTTTCATAGGGAAAACGGAATCTGCATTGGAAATCCTCTTTCATGTTTGGAAGATCCAATATGTCAACAAGCTGAATCTGATGGAATTTCTGGTTCCCCTTATGGTCTGCCACATGCCTTTTCTGATTCACAGTTGCACGAGAGTGCTGTTAGGTCTGGTTACTGCTCACAAGAAAGAATTGGCCAATCTTTTTCCTTGAACCTTGAAAATGCTCAATTATCTTCAATCCTATTTTCTAATGTCTCACAAGGGAATCCTATGGAGCTTCAACATGATCCCATTCACCACCATCCCCAAATACAAAGTAAGATACCAAAAGGTGACTCAGCCGAACTGTGCAAAAGGCAAGAAATGACGTCTTCTTCTCCATATTCAGATTCATTAGGAATGAACTGTCATGTTTATAATGATAGCATTTCAACTGAAAATAGGTACTCTAAAGCACAGTCTGGCTTAAGTGACTATAGCTTTCTTGCAAAGGATATTCAAGATAACTCTGTTAAATTAGAAAAGATGAATATAATTGAAGAGTATAATTGCATTCCAAGAAATGATGGAAGTGTTTATGTTGAGAAACCAGTCTTAATTGATATGGGAAACACGAGTGGATTGCATCTTTTGAACTCCTTCCCTGCTGGTAACTCAAATCCTCAGGTTAATATTCAAAAGAATTGGGAGGTTACATCTGAGGATAGAATTCCTGCATCATCGGGTATGGTGGAACTTTCTCAAAATAGTATTGTAGACAAGAGCTTATCTGGTCTTCTTGATATGAGCCAAAGGACTGATGATGGCAAGAAATGTGTATTAGCTGAAGGTTTGAATGGTAAACAAGATATTGACTCCTCGTTGACAAGGATATTTGATTTAAATGGCCCATTAAAATACGAAGAAAGCACTTCTGACAAAAGTAATATGGGCAATAATTTCTTTGAGCGGTCAATTAACCCAGACTCTCTTAAATGTGCACCAATTCAGATTTCTGAAAACCAACTGGCTTCAGGCTTTCATGAAACTCCAACACTAAGCTCAGTTAGATTGCACCTTGCTTCACCTCATGTTGATTGTGGTGCAAAGTTCAACTTGCCAATGAATGTTAATACTGCAGGCGAGAGTACTTCTTTTAGAAAGGCACCTTCTTTCCTTGATGACTCGGTGAGCAGTACAGATCAAATCATTGATCTGTTTAGGCATGAAAAACCTGTGTCTGGAAAGTCAAAAGTTAAAGACATGTCAGATCTGTCAAAGAATATACAATGGTGTCATAAGGCAAGCCGAACACAGCCATTTGTCGCAGTAGAAAATGTGATTAGTGTTTCTCCAAATATTGAGTCTTCGGTGGTACACAGCCCGTATGCTGTGGATGATGTTGGAAGTGATATTGGATCCGTTGCTCATACAGAAGGAGAAAGCATTGTCCCAGATTCTGAACTGGAGGATGTTAAAGATGATCAAACAGACAAGCATGAATTCCTTTCTGATGCAATGATAGCAGAAATGGAAGCCAGCATATATGGTTTGCAGATAATAAGGAATGCTGATCTTGAAGACCTTCTGGAGTTAGGATCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATGTTGCTATAAAAAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCTTCTGAGCAAGAACGGTTGGCAAAAGACTTCTGGAGAGAAGCACAAATCCTCTCAAATCTTCACCATCCCAATGTAGTGGCGTTTTATGGAATTGTACCGGATGGGGTTGGTGGAACATTAGCAACAGTAACAGAGTTCATGGTTAATGGTTCTCTTAGGCATGTACTCCTCAAGAAAGAAAGATTACTAGATCGTCGTCGAAAGCTGATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTGCACTCGAAAAACATTGTCCATTTTGATTTGAAATGTGACAACTTGCTTGTGAATCTAAGGGATCCACAGCGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATCAAACGTAATACCCTTGTGTCTGGGGGTGTACGAGGAACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGCAGCAGTAGCCGGGTTTCTGAGAAGGTTGATGTTTTCTCCTTTGGCATCTCACTGTGGGAGTTATTGACAGGAGAGGAACCATATGCAGACATGCATTGTGGTGCCATTATTGGGGGGATTGTAAAGAACACTCTTCGACCGCCTATTCCAGAACGCTGTGATCCTGAATGGAGGAAACTAATGGAAGAGTGTTGGTCAGCTGATCCGAACAGCCGACCATCATTCACAGAGATAACCAGCCGGTTACGATCCATGTCTGGAGCACTTCAAGTAAAGGGAACTGGTCAAATGCAGTAG	3033	0.4131	MIEEYQGFERLEGSQRLRIFLVPLTESEETPSSEVSMIQQSDPDYQYVVAVNGIADPSSRKSIGGKSLTNEASQFAPVFQKVSPNPSSAFEARGSVNSLNGDGFLNDSLSLPRCSSVSPIPIQVSGSSAGYVQFLGNDPFRGSTESNVPFVTAQLPPENSSTAIADWQYPQHGAVDRSKMPNGQHFGNYNLGKEFVTPVHVNPRDGREDQLFNERLFHRENGICIGNPLSCLEDPICQQAESDGISGSPYGLPHAFSDSQLHESAVRSGYCSQERIGQSFSLNLENAQLSSILFSNVSQGNPMELQHDPIHHHPQIQSKIPKGDSAELCKRQEMTSSSPYSDSLGMNCHVYNDSISTENRYSKAQSGLSDYSFLAKDIQDNSVKLEKMNIIEEYNCIPRNDGSVYVEKPVLIDMGNTSGLHLLNSFPAGNSNPQVNIQKNWEVTSEDRIPASSGMVELSQNSIVDKSLSGLLDMSQRTDDGKKCVLAEGLNGKQDIDSSLTRIFDLNGPLKYEESTSDKSNMGNNFFERSINPDSLKCAPIQISENQLASGFHETPTLSSVRLHLASPHVDCGAKFNLPMNVNTAGESTSFRKAPSFLDDSVSSTDQIIDLFRHEKPVSGKSKVKDMSDLSKNIQWCHKASRTQPFVAVENVISVSPNIESSVVHSPYAVDDVGSDIGSVAHTEGESIVPDSELEDVKDDQTDKHEFLSDAMIAEMEASIYGLQIIRNADLEDLLELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGVGGTLATVTEFMVNGSLRHVLLKKERLLDRRRKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSSRVSEKVDVFSFGISLWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSADPNSRPSFTEITSRLRSMSGALQVKGTGQMQ	1010

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241832g00001	1010	SUPERFAMILY	Protein kinase-like (PK-like)	720	993	IPR011009	-
	Stsc241832g00001	1010	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	856	868	IPR008271	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	SMART	serkin_6	731	998	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241832g00001	1010	ProSiteProfiles	Protein kinase domain profile.	731	1001	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241832g00001	1010	Pfam	Protein tyrosine and serine/threonine kinase	736	994	IPR001245	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	Gene3D	Transferase(Phosphotransferase) domain 1	819	1008	-	-
	Stsc241832g00001	1010	PRINTS	Tyrosine kinase catalytic domain signature	965	987	IPR001245	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	PRINTS	Tyrosine kinase catalytic domain signature	813	826	IPR001245	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	PRINTS	Tyrosine kinase catalytic domain signature	850	868	IPR001245	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	PRINTS	Tyrosine kinase catalytic domain signature	921	943	IPR001245	GO:0004672\|GO:0006468
	Stsc241832g00001	1010	ProSitePatterns	Protein kinases ATP-binding region signature.	737	762	IPR017441	GO:0005524
	Stsc241832g00001	1010	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	819	1010	-	-
	Stsc241832g00001	1010	Gene3D	Phosphorylase Kinase; domain 1	724	818	-	-
	Stsc241832g00001	1010	PANTHER	SERINE-THREONINE PROTEIN KINASE	34	995	-	-
	Stsc241832g00001	1010	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	724	818	-	-
	Stsc241832g00001	1010	CDD	STKc_MAP3K-like	737	994	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241832g00001	Stsc-Chr241832	3607	10831	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241832g00001	691	1000	MAP Kinase Kinase Kinase	AT1G16270	76.452	7.19e-161	502

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Stsc241832g00001		PK_Tyr_Ser-Thr	4.6e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241832g00001	-		-	aprc:113862751	1216.45