Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241831g00010 ATGCTAAAAAATCCAAGAGTGCTGAAAAAAGCACAAGCAGAAGTTAGGGAAGTTTTTGGTAACAAAGATTATGTTGATGAGAAGGGTCTTGAAGAACTGAAATTTCTAAAAGCAGTCATTAAAGAAAGTATGAGACTACACCCTGCAACTCCATTGTTACTTCCAAAAGAGTGTCTTAAGAGTTGTGAGATCAATGGATACACAATACCAGTTGGAACTCAAGTGTTTATAAATGCATGGGCAATTGGAATAGATCCAAACTATTGGATTGAAGCAGAGAGTTTCTGTCCTGAGAGATTCTTGGATTGTGAAATTGACTACAAAGGTTCCCATTTTGAATTCATCCCATTTGGTGCAGGGAAAAGAATATGCCCTGGGATATCATTTGCTATACATAATATTGAACTTCCCCTTGCACAGTTGCTGTATTATTTTGATTGGAATCTTCCCTTTGGAATTAGCCATGAGAATTTTGACATGACTGAACATTTTGGAAGTACTGTGAGAAGGAAAAATGACCTGCTTGCAATTCCTACAGCCCACCATAATGTGCCAACTTGA 561 0.3743 MLKNPRVLKKAQAEVREVFGNKDYVDEKGLEELKFLKAVIKESMRLHPATPLLLPKECLKSCEINGYTIPVGTQVFINAWAIGIDPNYWIEAESFCPERFLDCEIDYKGSHFEFIPFGAGKRICPGISFAIHNIELPLAQLLYYFDWNLPFGISHENFDMTEHFGSTVRRKNDLLAIPTAHHNVPT 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241831g00010 186 PANTHER OS08G0105600 PROTEIN 1 182 - -
Stsc241831g00010 186 Pfam Cytochrome P450 1 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 117 126 IPR017972 GO:0005506|GO:0016705
Stsc241831g00010 186 PRINTS E-class P450 group I signature 78 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS E-class P450 group I signature 114 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS E-class P450 group I signature 124 147 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS E-class P450 group I signature 37 55 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 Gene3D Cytochrome P450 1 172 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 FunFam Predicted protein 1 176 - -
Stsc241831g00010 186 PRINTS P450 superfamily signature 3 16 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS P450 superfamily signature 38 49 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS P450 superfamily signature 115 124 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 PRINTS P450 superfamily signature 124 135 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241831g00010 186 SUPERFAMILY Cytochrome P450 1 178 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241831g00010 Stsc-Chr241831 53729 54385 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241831g00010 1 178 Cytochrome P450 AT3G26310 51.124 1.20e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241831g00010 - - twl:119985149 268.855