Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241830g00011 ATGGAGGGAAGTGACACTTACAACAACTCTTCTAACTCTAACTCTCCTACTTCTTCTTGTGCGTCTCTTCCTCTTCCTCTTCCTCCTCCTGCGGCGGCGAAGATTGTTGTGATGAGTCCTTGCGCTGCATGCAAGATCTTGAGGAGGAGATGTGCCGAGAAATGTGTTCTCGCGCCATATTTTCCTCCCACTGAGCCTAGCAAGTTTACCATTGCTCATAGAGTCTTTGGTGCTAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAATGTCAAAGAGCTGATGCAGTGAGTAGCATGGTGTATGAAGCAAGTGCAAGAATAAGGGACCCAGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTTCAAAAGCAAGTCAATGAGCTTAGAGCACAATTGGCAAAAGCACAAGCTGAGGTTGTAACCATGCAGTTACAACAAGCCAATCTTGTTGCCCTAATTTGCATGGAAATGGCACAACAACAACAACAACAAGAATTTGAATCATCACCACAACAATCATCAATGGAAGATTTCAATAATGTTCCAAGCCCCCATCACTATCATCAACAAAGTAATAATAACATCAACTTCTTTGAGGATAACACTAGCCTCAACTCGATGTGGGAGCCTCTTTGGACATGA 645 0.4388 MEGSDTYNNSSNSNSPTSSCASLPLPLPPPAAAKIVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTIAHRVFGASNIIKFLQELPECQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELRAQLAKAQAEVVTMQLQQANLVALICMEMAQQQQQQEFESSPQQSSMEDFNNVPSPHHYHQQSNNNINFFEDNTSLNSMWEPLWT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241830g00011 214 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Stsc241830g00011 214 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
Stsc241830g00011 214 MobiDBLite consensus disorder prediction 164 194 - -
Stsc241830g00011 214 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241830g00011 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 192 - -
Stsc241830g00011 214 Coils Coil 119 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241830g00011 Stsc-Chr241830 75507 77776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241830g00011 36 214 AS2 family AT1G07900 62.903 1.00e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc241830g00011 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241830g00011 - - gmx:100789504 279.641