Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241830g00008 ATGGATCTTTCTAGTGCACAACACCACCAGCAAATAATGTCAAATAATAACAACAACAACCAGTCACTAGAAAGCATGTTGGGATCAAAACCTGAGCAAGTAGAACAAGAGAAGAAGCCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGGTGTGATTCCACAAACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTCTGCAAATCATGCAGACGGTACTGGACCAAAGGTGGAACATTGAGGAATGTTCCAGTAGGTGGTGGTTGCAGAAAGAACAAAAGATCTTCTTCTTCTTCATCAAAGAGGGCTCAAGATCAATTATTACCATTTAGCCCTTTAATCAATTCTCTGCCTCCATTGTCATCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAGAAACAAACATGTGGTGTGCAACTTGGTCTTGATGACCACCATGATCTCTCATCAATGTTGGTGATGAACACCAGCACCACCACAACACAACAACAACATGGATTCTTCAATGGATTCAACAACAACAATAACAACAACATGCAGAATGATTTGTACTATGGTGGTGGTGATGATATGATGATTCCTTATGATCAGCAAGAAATGAGTAGTGTTGAAACAACTCAAGCAGTTACTGTCACAACCATAAAGCAAGAACTGTGCAATGTTGGTGGTGGAAGAGAACAACAAAGTGATGATTGCAATGGTGGTGGTAATAATAATAATAAGGTTTTGTGGGGCTTTCCATGGCAGATCAATGGAGACACAACAAACATGGTTCTTGGAGACATTGATTTATCATCATCAAGAGCAAGTTGGAATAGTAATAATGGTCCTCTCACTACTCCATTATCTTGGCATGGACTTCTCAATAGCCCACTAATGTAG 915 0.4044 MDLSSAQHHQQIMSNNNNNNQSLESMLGSKPEQVEQEKKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRAQDQLLPFSPLINSLPPLSSYDSEFTLALARLQKQTCGVQLGLDDHHDLSSMLVMNTSTTTTQQQHGFFNGFNNNNNNNMQNDLYYGGGDDMMIPYDQQEMSSVETTQAVTVTTIKQELCNVGGGREQQSDDCNGGGNNNNKVLWGFPWQINGDTTNMVLGDIDLSSSRASWNSNNGPLTTPLSWHGLLNSPLM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241830g00008 304 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Stsc241830g00008 304 MobiDBLite consensus disorder prediction 31 45 - -
Stsc241830g00008 304 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Stsc241830g00008 304 MobiDBLite consensus disorder prediction 1 29 - -
Stsc241830g00008 304 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Stsc241830g00008 304 MobiDBLite consensus disorder prediction 1 50 - -
Stsc241830g00008 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 214 IPR045174 GO:0003700|GO:0006355
Stsc241830g00008 304 MobiDBLite consensus disorder prediction 92 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241830g00008 Stsc-Chr241830 45863 47314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241830g00008 46 293 C2C2-Dof Transcription Factor Family AT2G28510 42.424 1.11e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc241830g00008 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241830g00008 - - gmx:100799737 268.47