Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241830g00002 ATGGAACGGCTCCCGCCGATGGATCTTATGCGCTCCGAGAAGATGACGCTGGTACAACTCATCATTCCCACCGAGTCCGCTCACCGAGCCGTTACCTATCTCGGCCAACTCGGCCTCCTCCAATTCCGAGACTTAAATGCTGAGAAAAGTCCCTTTCAGAGAACGTTTGTTAACCAGGTGAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAGTAAAGCTGGGATAGTATCTTCTGGACCTGCAATGCAGCCAGATATTTACTTGGAAGATTTAGAGATGCAACTTGCTGAGCATGAACATGGGCTAACTGAAACGAACTCTAACAGTGAGAAGCTTCAGCAATCATATAAGGAACTATTGGAGTTCAAAATTGTAATGCAAAAGGCATGTGCTATTCTATTTTCAAATCATGGCCATGCGGTTTCAGAAGAGAGAGAACTAGAGGATATGAACTCCAAAGGAGATTATGTTGAGACACCATTTATATTTCAGCAGGAAACAACGACGGAGCCAACAAATCAATCTTGTTTAAGATTTATTAGTGGCATAATTTGTAAATCCAAAGTTCTTAGCTTTGAAAGGATTTTGTTTCGGGCTACAAGAGGCAACATGCTGTTCAATCATGAACCAGCTGATGACAAAATCACGGATCCTATTTCAAATGAGATGATAGAGAAAGAAGTGTTTGTTGTGTTTTTCTCTGGGGAGAGAGCAAGAACAAAGATTCTGAAAATTTGTGAGGCGTTTGGCGCACATACTTACCCTGTTCCTGAAGATATAAGTAAACAGAGGCAAATAATTAACGAGGTTTCATCACGTCTTGCTGATATAGAAGCTACTTTGGATGCTGGGACTAGGCACCGGAATAAGGCTCTAGCTTCTGTAGGAGATCATCTTGAAAAATGGATGGACATGGTAAGAAGAGAGAAAGCCGTCTATGATACATTGAATATGTTAAACTTTGATCTCACAAAAAAATGTCTTGTTGGTGAGGGATGGTGCCCTATATCTGCACAAGCACAGATTCATGAGGCATTGCAACGTGCAACTTTGGATAGCAATTCACAAGTTGGCATAATCTTTCATTCATTGGATGCACTTGAATCGCCACCTACATATTTTAGGACCAACAACTTCACAAGTCCATATCAGGAAATCATTGATGCATATGGTGATGCACATACCGCTGGTTTAATCAAATATCGAGATCCATACCCATTTGGTGTGGATCCTAGCTGGCGTGGAAGTCGTTCAGAATTGGCTTTTCTTAACTCCCTCAAGATGAAGATGTCCATTCTACTTGGTGTGGTGCATATGAACTTAGGAATCATATTAAGTTATTTCAATGCTTGTTTTTTTGGTAACTCAATAGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTTAAGTGGTGTACTGGCTCACAAGCGGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCATTTGAGAATCTTGGTGAGAATCAGTTATTCTGGGGCCAAGGGGTACTTCAAGTATTTTTGTTACTTTTTGCTCTAATTGCAGTTCCTTGGATGCTCTTTCCAAAACCTTTTCTACTAAAGAAGCTTCATGATGAGAGATTCCAAGGGCAAGCTTATGGTAAGCTTAATACCACTGAGATGGACCCTGAGGTGGAACCGGATTCAGCTCGGCAACATCAGGAGGAATTCAATTTTAGTGAGGTCTTTGTCCACCAAATGATTCACGCCATAGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCATCTTATCTTCGACTCTGGGCATTAAGCTTAGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTCATCATTCGGTTAATAGGGCTACTTGTTTTCTCGTTTGCAACTGCCTTTATACTACTCATGATGGAGAGTCTGAGTGCTTTTCTTCATGCCCTGCGTCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGCGATGGTTACAAGTTCAAACCTTTTTCCTTTGCCTCCTTAACAGACGATGAATAA 2124 0.4068 MERLPPMDLMRSEKMTLVQLIIPTESAHRAVTYLGQLGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGIVSSGPAMQPDIYLEDLEMQLAEHEHGLTETNSNSEKLQQSYKELLEFKIVMQKACAILFSNHGHAVSEERELEDMNSKGDYVETPFIFQQETTTEPTNQSCLRFISGIICKSKVLSFERILFRATRGNMLFNHEPADDKITDPISNEMIEKEVFVVFFSGERARTKILKICEAFGAHTYPVPEDISKQRQIINEVSSRLADIEATLDAGTRHRNKALASVGDHLEKWMDMVRREKAVYDTLNMLNFDLTKKCLVGEGWCPISAQAQIHEALQRATLDSNSQVGIIFHSLDALESPPTYFRTNNFTSPYQEIIDAYGDAHTAGLIKYRDPYPFGVDPSWRGSRSELAFLNSLKMKMSILLGVVHMNLGIILSYFNACFFGNSIDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPFENLGENQLFWGQGVLQVFLLLFALIAVPWMLFPKPFLLKKLHDERFQGQAYGKLNTTEMDPEVEPDSARQHQEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLIGLLVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLTDDE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241830g00002 707 Pfam V-type ATPase 116kDa subunit family 407 700 IPR002490 GO:0033179|GO:0046961|GO:1902600
Stsc241830g00002 707 Pfam V-type ATPase 116kDa subunit family 33 400 IPR002490 GO:0033179|GO:0046961|GO:1902600
Stsc241830g00002 707 Coils Coil 95 115 - -
Stsc241830g00002 707 PANTHER VACUOLAR PROTON ATPASES 400 705 IPR002490 GO:0033179|GO:0046961|GO:1902600
Stsc241830g00002 707 PIRSF ATP6V0A1 399 707 IPR026028 GO:0000220|GO:0046961
Stsc241830g00002 707 PIRSF ATP6V0A1 5 405 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241830g00002 Stsc-Chr241830 5930 13341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241830g00002 399 701 Primary Pumps ATPases(2) AT2G28520 81.373 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241830g00002 K02154 - gmx:100786845 645.58