Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241829g00007 ATGGAGGGGAGAAGAAAAGGCGTGAGAAGGGTTGAGAGTTTTCTGAGGGCGAAACACGGTGAGGAATCCAGCTATGCTGGACGAAGAAATAAGGGGGAGAGTTCTGGGGGATTTGTATCAGGTGAAAGGAGGGAAACACTGGGTGGTGATTTGGATGGGAACCAAGGGAAGGTAGAGAGACTGGTAACTGTTTTCATCAATAACATTCCGAGGAGAACATCAAGAAGGGACCTATGGTGGGAATTCAAAAGATACGGAAAGATCGTGGATGTGTATATCTCATGGAAGAAGAGAAAGCGAAGTGACGGTCCTTTTGGGTTTATTAGATTTGTAGAGTTAGCAGAAGCGAGAAAAGCTATCGAAGCGCTGAATGGTGCTATGTGGAGTGGAATGAGAATACAGGTCTCAATCTCAAAATTTGCTAGAAAGGAAGCGTCTCAAAATAGGAATATTGTGGGGCAAAGGAAAGAAATTTTGGAGGAGTCACGTGAAGGTGGGAAAGGTAAGAACGATGATGCCAAGCCTGGAAGGAGTAATAAGAAAGTGGTTGAAACTATGGTCCCGGAGGAGCAGAAACAACTTGTGGAAAGAAGCCTGATAGGTGAAAGCTTTAACTCTATCGATCTTGGAAGAATAACACAAATACTTAAGGAGGAGTGGACAGGTCCGGGTTTGATCGCCTGTAGAGATATGGAGCCAAACAAATGCCTGATCTCCCTGGAAAGTGTTGAATTCAGAGAAATGGCATTGAACAACTCCCTTCTTCTTTCGTTATTTGACGAAATTAGACCGTACTGGGGCTCTGGCAGAAGTAGAACCAGACGTGTTTAG 831 0.4452 MEGRRKGVRRVESFLRAKHGEESSYAGRRNKGESSGGFVSGERRETLGGDLDGNQGKVERLVTVFINNIPRRTSRRDLWWEFKRYGKIVDVYISWKKRKRSDGPFGFIRFVELAEARKAIEALNGAMWSGMRIQVSISKFARKEASQNRNIVGQRKEILEESREGGKGKNDDAKPGRSNKKVVETMVPEEQKQLVERSLIGESFNSIDLGRITQILKEEWTGPGLIACRDMEPNKCLISLESVEFREMALNNSLLLSLFDEIRPYWGSGRSRTRRV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241829g00007 276 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 63 182 - -
Stsc241829g00007 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Stsc241829g00007 276 MobiDBLite consensus disorder prediction 153 182 - -
Stsc241829g00007 276 CDD RRM_SF 64 136 - -
Stsc241829g00007 276 MobiDBLite consensus disorder prediction 154 182 - -
Stsc241829g00007 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Stsc241829g00007 276 SMART rrm1_1 63 136 IPR000504 GO:0003723
Stsc241829g00007 276 SUPERFAMILY RNA-binding domain, RBD 56 139 IPR035979 GO:0003676
Stsc241829g00007 276 Gene3D - 42 182 IPR012677 -
Stsc241829g00007 276 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241829g00007 Stsc-Chr241829 63638 64468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241829g00007 60 125 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 6.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241829g00007 K12891 - lsv:111912416 76.6405