Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241829g00005 ATGGTGAGGGGAAAGATTGAGATGAAAAGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGCGCAGGAATGGGCTTCTAAAGAAAGCACATGAGTTATCTGTTCTTTGTGATGCACAAATTGCCCTTATAATCTTCTCACAAAGTGGCAGACTCATTGAATACTCAAGTACTTCAGACGTGCAACAAATTTTGGAACGCTACCGTCAATATGTAGCCAATGATGATCGTATCAATAATATTGGAGACATCCAGCAAATGGAATTTGACCGCTCAAGCTTGGCTAAGCAGATTGAGTTTCTTGAGGTTTCTCAAAGGAAGCTAATGGGACAGGGCTTGAGCTCTTGTTCATATGATGAACTTGTTGGAATTGAGAATCAACTTGTCTCAAGTTTGCAAAACATCAGGCTCAAAAAGACTCAGCTTTATAAAGAGCATATTGAACAACTACAAAATAAGGAGAAAGATTTGCTCCAAGAGAATGCCAAATTAACTGAAATGTGTGGGAGAAGAAAAGCTTCAGAAGAAGAGCAACAATGGGGTAAACAACAGAGAGAAGCATCAGCATTATCCCCCAGTCCAAGTAACCAAACTTCTGATCTCGTGGAGACTGAATTGTTCATTGGACTTCCTGAATGGCGCTAG 651 0.4025 MVRGKIEMKRIENATSRQVTFSKRRNGLLKKAHELSVLCDAQIALIIFSQSGRLIEYSSTSDVQQILERYRQYVANDDRINNIGDIQQMEFDRSSLAKQIEFLEVSQRKLMGQGLSSCSYDELVGIENQLVSSLQNIRLKKTQLYKEHIEQLQNKEKDLLQENAKLTEMCGRRKASEEEQQWGKQQREASALSPSPSNQTSDLVETELFIGLPEWR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241829g00005 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Stsc241829g00005 216 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Stsc241829g00005 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 MobiDBLite consensus disorder prediction 185 204 - -
Stsc241829g00005 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 MobiDBLite consensus disorder prediction 171 204 - -
Stsc241829g00005 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Stsc241829g00005 216 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Stsc241829g00005 216 Coils Coil 142 169 - -
Stsc241829g00005 216 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241829g00005 216 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241829g00005 216 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Stsc241829g00005 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc241829g00005 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241829g00005 Stsc-Chr241829 42186 54872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241829g00005 1 212 MADS-box Gene Family AT5G51860 46.544 2.42e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241829g00005 K-box 9.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241829g00005 - - aip:107642209 337.421