Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241829g00001 ATGGGAAGAGGGAGAGTAGTTCTTGAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTTTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCTTTTGAGTTATCAGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAGTCGTGGCAAGCTTTTTCAGTATAGCAGTTCCGACATTAGTAGAATTATTGAGAGGTATCGTCAATGCCGTTATAACAAGTTGTCAAATTCTGGAAATTTGTTTGATCAGCAATCACAGAACTTGTACCAGGAATTCTTGAAATTAAAGGTAAAATATGAATCTCTGGAGAGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCCCTTGGCATGAAGGAATTAATGAATCTTGAGAAACAAGTCGAAAAAACTCTTGCACAAGCTCGACAGCTCCATATGAAGAAGCTCATAGCAAGACAGGCCGAATTAAGTGAAAAGGTGAACGAGGACCAGGAGCTCAACAAAAAGTTGAAATCCAAGATAAGAGATGAATTCCCGGACCTGATTGGTGAGCATAACATCAACAACAACAACCCTATTCATCACTTGAATGAAGCACAAGCAGCTATTAATCAGTTCCAGTCTGACACAATCTTAAGCACTACATGCATTTTTCGGCATCATCAGGATGGAAAAGAAAGTGATGCAATCCAACAAGATGGTCAGAGCAGCCATGATGAAAACAACAATGGTTGGCTTGTGTGA 738 0.3984 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSSDISRIIERYRQCRYNKLSNSGNLFDQQSQNLYQEFLKLKVKYESLERTQRHFQGEELEPLGMKELMNLEKQVEKTLAQARQLHMKKLIARQAELSEKVNEDQELNKKLKSKIRDEFPDLIGEHNINNNNPIHHLNEAQAAINQFQSDTILSTTCIFRHHQDGKESDAIQQDGQSSHDENNNGWLV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241829g00001 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 FunFam MADS-box transcription factor MADS-MC 13 80 - -
Stsc241829g00001 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241829g00001 245 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Stsc241829g00001 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc241829g00001 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 211 - -
Stsc241829g00001 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241829g00001 245 MobiDBLite consensus disorder prediction 227 245 - -
Stsc241829g00001 245 MobiDBLite consensus disorder prediction 221 245 - -
Stsc241829g00001 245 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Stsc241829g00001 245 Coils Coil 122 171 - -
Stsc241829g00001 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc241829g00001 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241829g00001 Stsc-Chr241829 16947 20887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241829g00001 1 175 MADS-box Gene Family AT2G45650 54.857 8.60e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241829g00001 K-box 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241829g00001 K09264 - gmx:100793681 280.026