Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241828g00012 ATGGCGGCATCGTCTTCTTCAGCATCTCAATCGCATTTCACATATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCATCTCCAGCAATCCGCCGCCACACCTGTGCATTACGCCTCTGCCCCATACGCTGCCGTTCCGGCCGTGCAAATCCCCACGCCTGCGGTCATTGGCCCCGTCGCTCCAGCTCCGGTTTCCGGCGTGTACTCCGTGCCGCAATATCAGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGGCGGAGGCGTTGGAGAGTGTTAAGGCGGCGATTGCGAGCAGCGAGGCCGAGAACAAGGCGGAGGCCAAGAAGAAAGCAGTTCCAAGAAAAGCTGCTGGTCAAACGTGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTACAAAAGCATTTTCACGTTTTCCTTCCTTTAACATGGCACGGGTCGTCAGAGATAAACGGACTGGGAAAACAAAAGGCTATGGTTTTGTAAGCTTTGCCAGTCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTCTGTAA 606 0.5231 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPVHYASAPYAAVPAVQIPTPAVIGPVAPAPVSGVYSVPQYQSQQLFERDAQIITAEALESVKAAIASSEAENKAEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFASPADLAAALKEMNGL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241828g00012 201 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 200 - -
Stsc241828g00012 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 200 IPR000504 GO:0003723
Stsc241828g00012 201 CDD RRM_RBM42 131 200 IPR034215 -
Stsc241828g00012 201 SUPERFAMILY RNA-binding domain, RBD 121 200 IPR035979 GO:0003676
Stsc241828g00012 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 201 IPR000504 GO:0003723
Stsc241828g00012 201 Gene3D - 73 201 IPR012677 -
Stsc241828g00012 201 FunFam RNA-binding protein 42 72 201 - -
Stsc241828g00012 201 SMART rrm1_1 138 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241828g00012 Stsc-Chr241828 55224 59878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241828g00012 139 200 Eukaryotic Initiation Factors Gene Family AT4G34110 35.484 4.74e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241828g00012 K25079 - gmx:100807693 288.885