Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241828g00011 ATGGCGGCATCGTCTTCTTCAGCATCTCAATCGCATTTCACATATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCATCTCCAGCAATCCGCCGCCACACCTGTGCATTACGCCTCTGCCCCATACGCTGCCGTTCCGGCCGTGCAAATCCCCACGCCTGCGGTCATTGGCCCCGTCGCTCCAGCTCCGGTTTCCGGCGTGTACTCCGTGCCGCAATATCAGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGGCGGAGGCGTTGGAGAGTGTTAAGGCGGCGATTGCGAGCAGCGAGGCCGAGAACAAGGCGGAGGCCAAGAAGAAAGCAGTTCCAAGAAAAGCTGCTGGTCAAACGTGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTACAAAAGCATTTTCACGTTTTCCTTCCTTTAACATGGCACGGGTCGTCAGAGATAAACGGACTGGGAAAACAAAAGGCTATGGTTTTGTAAGCTTTGCCAGTCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTGCGAAAGAGTAAGTGGAAGGAGAGGACAGATTTCGAGGCCCTAGAAAAACAGAAGAGCCAAACTCATAAGAAATCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 738 0.5068 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPVHYASAPYAAVPAVQIPTPAVIGPVAPAPVSGVYSVPQYQSQQLFERDAQIITAEALESVKAAIASSEAENKAEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFASPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDFEALEKQKSQTHKKSKLPRKGVLHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241828g00011 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Stsc241828g00011 245 MobiDBLite consensus disorder prediction 221 245 - -
Stsc241828g00011 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Stsc241828g00011 245 FunFam RNA-binding protein 42 72 222 - -
Stsc241828g00011 245 Gene3D - 77 237 IPR012677 -
Stsc241828g00011 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 64 226 - -
Stsc241828g00011 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Stsc241828g00011 245 SUPERFAMILY RNA-binding domain, RBD 121 217 IPR035979 GO:0003676
Stsc241828g00011 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241828g00011 Stsc-Chr241828 55174 59878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241828g00011 139 225 Eukaryotic Initiation Factors Gene Family AT1G71770 32.673 5.97e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241828g00011 K25079 - gmx:100807693 368.622