Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241827g00004 ATGATGTCCGACGCTCCGGCGAATCCTGGTGGCAGCGGAAAAGAAGAAGAAGAAAGCTCAGACAGCTTGGAGGAGGATCGATGCGTTTACCTTCCGTACATTAGCATAAAGAATGCCATGAAGAGGGTTCTACCGAGGGAAGTGAAAATCTCCGAAGACGCGGAGCTTACCGTACAGAAATGCGTCTCTGAGTTCATCAGCTACGTCACCACCAAGGTGTGCGAAAAGAAAAAGAAGGAAGGGAGGAAAGCCACCATTTCAGGCAATGATGTGATTAAGGCGATGATCGATCTTGGTTTCGGGGATGATCGTACTAAACCTCTACAGGTTTACCTCAATAAACTCACAGAGACAGAGACGCCAAAGAGGGATCCTCCTACTTCCTTGGAGAACGAACGTAACAAGGTTCCTAAGCTTGGCCAGCAGTAG 429 0.4848 MMSDAPANPGGSGKEEEESSDSLEEDRCVYLPYISIKNAMKRVLPREVKISEDAELTVQKCVSEFISYVTTKVCEKKKKEGRKATISGNDVIKAMIDLGFGDDRTKPLQVYLNKLTETETPKRDPPTSLENERNKVPKLGQQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241827g00004 142 Gene3D Histone, subunit A 16 142 IPR009072 GO:0046982
Stsc241827g00004 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc241827g00004 142 MobiDBLite consensus disorder prediction 117 131 - -
Stsc241827g00004 142 MobiDBLite consensus disorder prediction 112 142 - -
Stsc241827g00004 142 MobiDBLite consensus disorder prediction 1 24 - -
Stsc241827g00004 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Stsc241827g00004 142 SUPERFAMILY Histone-fold 30 133 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241827g00004 Stsc-Chr241827 28308 30327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241827g00004 2 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 45.299 2.26e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc241827g00004 CBFD_NFYB_HMF 1e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241827g00004 K08065 - nnu:104588670 90.8929