LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241824g00004	ATGGAGATTATGGAAGATGTCTCCGGTGCCCATTTCTCCGGTTGGAGGCCTTCATCCACGAATCCTACTTCTCCTTCTTCTCCCACCGCTCCTTCTCAACAACCCTTCGTTATCGGGGTCTCTGGAGGCACCGCATCGGGGAAGACAACAGTGTGTGAATTGATCATTCAACAACTGCAAGATCACAGAGTTGTTCTTGTTTGTCAGGACTCATTCTACCGTGGACTAACAAATGAAGAGCTGAAACACGTTCATAAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTCAGCAAGCTCAAATCTGGCCATTCAGTTCAGGTTCCAATATATGATTTCAAGCTCCATCAGAGATCTTCTGATATTTTCCGACTGGTGAATGCATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAGCAAAGAGTCCGTGACATGATGAATATGAAAATATTTGTTGATGCAGATCCTGACGTAAGGCTTGCCCGCAGAATAAAACGTGACACTGTCGATAGAGGTAGAGATGTACACTCCGTTCTGGAACAGACTAGAGGCATGCATACTATTATTCGTGACAAGGATGTCTCAAAGCATGATTTTGTTTTTTATTCTGATCGGCTAATTCGTTTGGTAGTGGAACACGGTCTTGGTTACTTCCCATTTAAAGAGAAACAAATTATCACTCCTACAGGAGCAACTTATACTGGAGTTGAATTTTGTAAGCAATTGTGTGGAGTATCCATTATACGAAGTGGTGAAAGCATGGAAAACGCTTTGCGCGCATGCTGTAAAGGAATAAAAATAGGAAAGATACTCATCCACCGTCAAGGTGAGGAAACCCAGCTTATCTATGAGAAGCTTCCGAATGATATTTCAGAGAGACATGTTCTTCTGATGGATCCTGTACTCAGTACAGGTAACACTGCCAGCCAAGCAATTGAGCTTCTTATAAACAAAGGAGTTCCAGAGGCCAATATAATATTCCTCAACCTCATCTCTGCTCCTGAGGGAATAAATTGTGTATGCACACGTTTTCCGAACATCAAGATTATCACTTCGGAGATTGAAGAGGGGCTAAATGACCAGTGCCGTGTCATACCAGGTTTAGGAGAATTTGGTGACCGCTATTTTGGCACAGACGATTAG	1173	0.4228	MEIMEDVSGAHFSGWRPSSTNPTSPSSPTAPSQQPFVIGVSGGTASGKTTVCELIIQQLQDHRVVLVCQDSFYRGLTNEELKHVHKYNFDHPDAFDTEQLVETLSKLKSGHSVQVPIYDFKLHQRSSDIFRLVNASDVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLARRIKRDTVDRGRDVHSVLEQTRGMHTIIRDKDVSKHDFVFYSDRLIRLVVEHGLGYFPFKEKQIITPTGATYTGVEFCKQLCGVSIIRSGESMENALRACCKGIKIGKILIHRQGEETQLIYEKLPNDISERHVLLMDPVLSTGNTASQAIELLINKGVPEANIIFLNLISAPEGINCVCTRFPNIKIITSEIEEGLNDQCRVIPGLGEFGDRYFGTDD	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241824g00004	390	Gene3D	-	176	388	IPR029057	-
	Stsc241824g00004	390	PRINTS	Uridine kinase signature	181	192	-	-
	Stsc241824g00004	390	PRINTS	Uridine kinase signature	65	76	-	-
	Stsc241824g00004	390	PRINTS	Uridine kinase signature	35	52	-	-
	Stsc241824g00004	390	PRINTS	Uridine kinase signature	167	177	-	-
	Stsc241824g00004	390	PRINTS	Uridine kinase signature	110	125	-	-
	Stsc241824g00004	390	CDD	PRTases_typeI	250	361	IPR000836	-
	Stsc241824g00004	390	FunFam	Uridine kinase	32	216	-	-
	Stsc241824g00004	390	CDD	UMPK	37	196	IPR000764	-
	Stsc241824g00004	390	Pfam	Phosphoribulokinase / Uridine kinase family	37	192	IPR006083	GO:0005524\|GO:0016301
	Stsc241824g00004	390	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	33	192	IPR027417	-
	Stsc241824g00004	390	Gene3D	-	28	139	IPR027417	-
	Stsc241824g00004	390	FunFam	Probable uracil phosphoribosyltransferase	178	388	-	-
	Stsc241824g00004	390	MobiDBLite	consensus disorder prediction	13	35	-	-
	Stsc241824g00004	390	SUPERFAMILY	PRTase-like	191	387	IPR029057	-
	Stsc241824g00004	390	MobiDBLite	consensus disorder prediction	1	35	-	-
	Stsc241824g00004	390	PANTHER	URIDINE KINASE	30	298	-	-
	Stsc241824g00004	390	Pfam	Uracil phosphoribosyltransferase	191	388	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241824g00004	Stsc-Chr241824	37350	40808	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241824g00004	4	390	PRT Gene Family	AT5G40870	63.002	0.0	561

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241824g00004	K00876		-	sly:101245556	568.155