LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241824g00003	ATGGTTTCAACGAGACGCAGTGGATCTCTTTCCACTAACAACAGCAAAAGATCCTCCTCTTCCGACGGTAACAGCAAGCCACCTTCTCCCAAGCGCCCCAAGGTCGACAATGCCAGTCCGTCGGAGAAATCGATACCTGCGGCGGAGAATTCCAAGGAGAACGTCGCTCCCGCGGAGCCTGCTCGCGCTCCTGGAGAATGTGGCTCCGGTGGCGCACAGGCACAGATCGACGGTGCTTCTTCTGCTTCTGAAGAAGGTATGAGCTCCGGGAAGGGCGATGCTATACCGTCTGTGGCCGTTGCTGTGACGCCGCCGATTGCTGATGCCACATGTCCTTCGTTCTCTTCGCGGAATCTCCATCAGAAGCAAAACCCGAGCTCTGAGGCTTCTGGGGCTCCGTGGTGCAAGCTCTTGTCCCAATCTGCACAGAATTCGAATATTCTTGTTTGCCAGACGACTTTTACAATTGGCTCCAGTAGGAGCTGCCACTTTGCGATGAAGGAACAAACAGTAAGCGCGAATTTGTGCAAGATAAAGCATACCCAGGGTGAGGGAGGTACTGTTGCCGTGCTAGAGAGTAAAGGTAGCAAAGGATCTGTGTTTGTGAATGGCAGCCTTGTCAAAAAGAACACAAGCCGTGTCCTTAAGTCAGGCGACGAGCTTGTGTTTGATATTCTGGGAAATTATTCTTACATTTTCCAGCAAATAAATGCCGAGTCTTCAATTAAGGGAGCAGATGTTCAGAGTGGTGCAGGGAAATTCATGCAGCTTAAGAGAAGAACTGGAGACCCTTCCGCTGTAGCTGGAGCTTCTATTTTGGCTTCTCTTTCTAACTTCAGACAGGAGTTTGCAAGATTGAAGTCCCCATCTCAGAATTCACCTAAGGTTCACAAGAGCACTGATGTCTCTGATCATCCTGAACTTCATGAGGGTACAGATGACAAGCTTGATGATGGCTTGGAATCAGCTCCAAATATGCAATGTGATAAAGCAGCTGATGTTGGAACAAGTGACAAGAATTCACCAATGGATTGCGTTCCAGATGCTGGCACAGAGGCAGGCAATGTGTTGGAAGAAAGAAATGGGACACGGGATACACTGGCTCCATCAACTTCGGGGACTTCTGCGCGCTGTGAGGTGTTCAAAGAAGTTGTTCGTGCTGCAATACTGGATGGAAAGGAAATAGATGTGTCTTTTGACAACTTCCCATATTACTTGAGTGACAATACCAAAAATGTCCTCGTGGCAGCTTGCTATATACACCTCAGGCATAAAGAACGTAAAAAGTACTCTGCAGATCTTACAACCATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGTTCCGAAATTTATCAAGAGATGTTGACAAAAGCACTTGCAAAACACTTCGGAGCTAAATTGCTCATATTTGATAGCCATTCACTTTTGGGTGGTATATCTTCCAAGGAAGTGGAGCTCGTCAAAGATGGATTTAATGCCGAAAAATCCTGCAGCAATACCAAACAAAGTTATACAGCCAGAGACTTGGCTATACATTTCCTTGAGTCTGAACCAAAGTTGGAAATTGATAACTTACCATCTACCTCGGGAGCAGCTAAAACTTGCCCCTTCAAATTAGGTGATAGGGTGAAGTTTAACTGTTCATCTTCTTGTGGTTTATACCATACATCTTCAAGGGGCCCACCTAATGGCAGTCGCGGGAAAGTTGTCTTACTATTTGAAGATAATTCCCTGTCTAAAATTGGTGTGAGATTTGATAAGCCAATACCTGATGGTGTTGATCTTGGAGGTGTCTGTGAGCTAGGCCAAGGATTCTTCTGCAATGTCACTGATCTGCGATTGGAAAACAGTGGTGTGGCAGAACTGGACAAACAACTCATTAATACATTGTTTGAGGTTGTTTATAGTGAGAGCAGAAGTTCACCATTCATCTTGTTCATGAAAGATGCTGAGAAATCTATAGTTGGAAATGGAGACCCATGTTCCTTTAAAAGTTGGCTTGAAAATCTTCCACACAATGTGGTGGTAATAGGTTCTCAAACTCAAACTGACAGTCGAAAGGAGAAGTCACATGCTGGCGGTTTGCTTTTTACAAAATTTGGAAGCAATCAGACTGCCCTTCTTGACTTGGCTTTTCCAGATAGTATTGGGCGATTGCATGACAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAATCGCAATTCACATGCCACAGGATGAGGCCCTTCTTGCATCTTGGAAGCAGCAATTGGAACGAGACGTTGAGACTCTTAAAATCCAAGGAAATTCACATAACTTGCGCTCAGTCACTCTCCTATATCATGTTTACCATACTGCAGATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCATCACCTCATGCAGAATCCTGGAGCTGATGCTGATTCAAAGCTTATGTTGTCTTGTGAGAGCATACAGTATGGAATAGGGATATTGCATTCCATCCAAAATGAATCCAAGAGCATGAAGAAGTCTCTTAAGGATGTTGTAACAGAGAATGAGTTCGAAAAGAGGCTTTTGGCTGATGTTATTCCCCCTAATGACATTGATGTTACTTTTGATGACATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAATTGGTGATGCTTCCATTACAGAGGCCTGAGCTGTTCTGCAAGGGTCAATTAACCAAGCCTTGCAAGGGTATACTACTATTTGGTCCCCCCGGAACAGGAAAAACAATGCTTGCCAAGGCTGTTGCTACCGAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGCATCACATCGAAGTGGTTTGGTGAGGGTGAGAAATACGTAAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCAAGTGTTATATTTGTCGACGAAGTTGACAGCATGTTGGGCCGGAGAGAAAATCCAGGGGAGCATGAGGCTATGCGGAAGATGAAAAATGAATTCATGGTAAATTGGGACGGCTTACGGACAAAGGATACAGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATAAGGAGACTGCCACGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGTGAAAGAGGAATTGTCTCCAGATGTGGATTTGGACGCTGTTGCAAATATGACTGATGGATATTCTGGAAGCGATCTTAAGAACCTATGTGTAACTGCTGCACACCGCCCAATCAAGGAAATATTAGAAAAGGAAAAAACGGAACTTGCTGCTGCTGTAGCTGAAGGTCGAGCTCCTCCACCATTATGTGGTAGTGGGGATGTCCGATCTTTAAATATGGAAGACTTCAAATATGCTCAGCAACAGGTATGTGCAAGTGTTTCCTCTGATTCCCTAAACATGAATCAGCTTCAACAATGGAACGACCTTTATGGTGAAGGTGGTTCCAGAGTAAAGAAATCACTCAGCTATTTCATGTGA	3522	0.4458	MVSTRRSGSLSTNNSKRSSSSDGNSKPPSPKRPKVDNASPSEKSIPAAENSKENVAPAEPARAPGECGSGGAQAQIDGASSASEEGMSSGKGDAIPSVAVAVTPPIADATCPSFSSRNLHQKQNPSSEASGAPWCKLLSQSAQNSNILVCQTTFTIGSSRSCHFAMKEQTVSANLCKIKHTQGEGGTVAVLESKGSKGSVFVNGSLVKKNTSRVLKSGDELVFDILGNYSYIFQQINAESSIKGADVQSGAGKFMQLKRRTGDPSAVAGASILASLSNFRQEFARLKSPSQNSPKVHKSTDVSDHPELHEGTDDKLDDGLESAPNMQCDKAADVGTSDKNSPMDCVPDAGTEAGNVLEERNGTRDTLAPSTSGTSARCEVFKEVVRAAILDGKEIDVSFDNFPYYLSDNTKNVLVAACYIHLRHKERKKYSADLTTINPRILLSGPAGSEIYQEMLTKALAKHFGAKLLIFDSHSLLGGISSKEVELVKDGFNAEKSCSNTKQSYTARDLAIHFLESEPKLEIDNLPSTSGAAKTCPFKLGDRVKFNCSSSCGLYHTSSRGPPNGSRGKVVLLFEDNSLSKIGVRFDKPIPDGVDLGGVCELGQGFFCNVTDLRLENSGVAELDKQLINTLFEVVYSESRSSPFILFMKDAEKSIVGNGDPCSFKSWLENLPHNVVVIGSQTQTDSRKEKSHAGGLLFTKFGSNQTALLDLAFPDSIGRLHDRGKEVPKPNKTLTKLFPNKIAIHMPQDEALLASWKQQLERDVETLKIQGNSHNLRSVTLLYHVYHTADAEKIIGWALSHHLMQNPGADADSKLMLSCESIQYGIGILHSIQNESKSMKKSLKDVVTENEFEKRLLADVIPPNDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILVKEELSPDVDLDAVANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKTELAAAVAEGRAPPPLCGSGDVRSLNMEDFKYAQQQVCASVSSDSLNMNQLQQWNDLYGEGGSRVKKSLSYFM	1173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241824g00003	1173	ProSitePatterns	AAA-protein family signature.	1012	1031	IPR003960	GO:0005524\|GO:0016887
	Stsc241824g00003	1173	SMART	AAA_5	905	1042	IPR003593	GO:0016887
	Stsc241824g00003	1173	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc241824g00003	1173	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	867	1043	-	-
	Stsc241824g00003	1173	MobiDBLite	consensus disorder prediction	1	93	-	-
	Stsc241824g00003	1173	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	380	1172	-	-
	Stsc241824g00003	1173	MobiDBLite	consensus disorder prediction	286	372	-	-
	Stsc241824g00003	1173	Pfam	ATPase family associated with various cellular activities (AAA)	909	1038	IPR003959	GO:0005524\|GO:0016887
	Stsc241824g00003	1173	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	867	1142	IPR027417	-
	Stsc241824g00003	1173	MobiDBLite	consensus disorder prediction	298	320	-	-
	Stsc241824g00003	1173	Gene3D	-	1041	1135	-	-
	Stsc241824g00003	1173	CDD	RecA-like_ATAD1	872	1038	-	-
	Stsc241824g00003	1173	Gene3D	-	867	1147	IPR027417	-
	Stsc241824g00003	1173	Pfam	AAA+ lid domain	1062	1097	IPR041569	-
	Stsc241824g00003	1173	Pfam	FHA domain	155	223	IPR000253	GO:0005515
	Stsc241824g00003	1173	SUPERFAMILY	SMAD/FHA domain	133	225	IPR008984	GO:0005515
	Stsc241824g00003	1173	Gene3D	-	133	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241824g00003	Stsc-Chr241824	18267	28118	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241824g00003	868	1109	Calmodulin-binding Proteins	AT3G56690	40.562	3.66e-41	162

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241824g00003	-		-	gmx:100816731	1721.44