Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241821g00012 ATGGAAAAGTACGAGCTGGTGAAGGATATAGGATCTGGGAATTTCGGTGTGGCAAGGCTTATGCGCCACAAAGAGACCAAGGAGCTCATTGCCATGAAATACATTGAAAGGGGTCACAAGATTGATGAAAATGTTGCAAGGGAAATCATAAACCACAGAAGTCTTCGCCACCCGAATATCATTCGGTTCAAGGAGGTGGTTTTGACTCCTACACATCTTGGAATAGTGATGGAGTATGCAGCTGGTGGAGAGCTCTTCGAGCGAATTTGCAATGCTGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTTCAGCAGCTCATCTCTGGAGTTAGCTACTGCCATTCCATGCAAATTTGCCATCGAGACTTGAAGCTGGAGAATACCTTATTGGATGGCAGCCCTGCCCCTCGTCTGAAGATTTGTGACTTTGGTTATTCCAAGTCATCTCTGCTGCACTCAAGACCTAAATCAACAGTGGGAACTCCTGCCTACATTGCACCAGAGGTTCTTCAACGAAGAGAGTATGATGGAAAGTTGGCAGATGTATGGTCATGTGGAGTGACTCTTTATGTAATGCTGGTTGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAACTTCAGGAAAACCATAAATCGAATTATGGCTGTCCAATACATGATCCCAGACTATGTTCACATATCTCAAGACTGTAGGCATCTGCTATCTCGCATTTTTGTGGCTAATCCAGCCAGGGTATGTACATACTGTGCTGTTAAATATCATGAGGCCGAATTTGCTTTTTTATTTATCCATTGA 804 0.4391 MEKYELVKDIGSGNFGVARLMRHKETKELIAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLQRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYMIPDYVHISQDCRHLLSRIFVANPARVCTYCAVKYHEAEFAFLFIH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241821g00012 267 Gene3D Transferase(Phosphotransferase) domain 1 80 260 - -
Stsc241821g00012 267 ProSiteProfiles Protein kinase domain profile. 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241821g00012 267 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc241821g00012 267 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Stsc241821g00012 267 FunFam Serine/threonine-protein kinase SRK2E 80 264 - -
Stsc241821g00012 267 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Stsc241821g00012 267 SUPERFAMILY Protein kinase-like (PK-like) 2 258 IPR011009 -
Stsc241821g00012 267 PANTHER SERINE/THREONINE KINASE 2 257 - -
Stsc241821g00012 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Stsc241821g00012 267 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241821g00012 267 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241821g00012 267 CDD STKc_SnRK2 3 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241821g00012 Stsc-Chr241821 81758 83911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241821g00012 3 250 CBL-interacting serine-threonine protein kinases AT2G26980 42.471 2.40e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc241821g00012 Pkinase 3.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241821g00012 K14498 - gmx:100812259 501.901