Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241821g00006 ATGTCATTCAATCTTCGGAATGTTTCAAAGCTGATTCTTCCTCCACTTGGAGTTTCATCAAACAAGTATGAGCAGAACCCTGTTGATTCCAGAGGGTGGATCATATCACCAATGGATTCAAGATACAGATGGTGGGAGAGTTTGATGGTAATTCTGGTAGCATACTCTGCATGGGTGTATCCATTTGAAGTAGCATTCATGCACTCATCTCCACCACAATATAGAACAAGAATCTACATTGTTGACACTCTTGTTGATCTCTTCTTTGCCGTTGACATTGTTTTGACCTTCTTCTTGGCTTACATAGATCGAACAACTCATCTCTTAGTTCAGGACTCCTCAAAGATTCTACTCAGGTACTTGTCAACATGGTTTCTAATGGATGTGGCATCAACTATCCCTTACGAGGCACTTTCTTGCTTGTTCACCGGCAAACACTATGTCTCCCTCCCTTACTACCTCCTTGGCCTCCTCCGATTTTGGCGGCTCCGCCGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATAAGGTTCAGCTATTTCTGGATCCGATGTGCTAGGCTTCTCTCTGTAATGGTATTTTCAGTTCATTGTGGTGGGTGCTTGTATTACATGGTGGCTGATAGGTACCCTCATAAAGGAAAGACATGGATTGGTGCAGTAAATCCAAACTTCAGAGAGACAAACCTTTGGATCAGATACATCTCAGCCATGTATTGGTCCATCACCACCATGTCCACCGTTGGCTATGGCGACCTCCATGCAGTTAACACCTTTGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTCGGCCTAACCGCTTACTTGATTGGTAACATGACTAACCTTGTTGTCGAAGGAACTCGCCGTACCATGGAATTCAGAAATAGTATTGAATCAGCATCAAACTTTGTGTCCCGAAATCGATTGCCTCCGAGGTTAAAAGAGCAGATCCTGGCTTACATGTGTTTGAGATTCAAAGCTGAGAGCTTGAATCAGCATCATCTCATTGAGCAACTACCAAAATCAATTTGCCAGAGCATTTGCCAGCACTTGTTCTATGAAACTGCAGAAAAAGCTTATCTTTTCAAAGGTGTCTCAAAGGAAATTCTTCTATCCTTGGTTACAAAAATGAAGGCAGAGTATCTACCTCCTAGAGAGGATGTTATTATGCAAAACGAAGTGCCGGATGATGTTTACATCATAGTTTCCGGGGAAGTGGAGTTCATTGATTGTGGAATGGAGAAAGAAAGAGTCGTGGGGACTCTACAAACTGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTACAGACCTCAGAGATTTACCTTTAGAACAAAGACTCTAACACAGCTTCTCAGGCTGAAAACCAGTACACTGATTGAAACAATGCAGGTTAAGAAAGAAGACAATATACAAATACTCAAGAATTTCCTTCAGCATTTCAAGCAGCTTAAGAATCTTAGTATCAAAGATTTAATGGTGGAGAGTGTGGAAGAAGAGGATTCTGACATGACTGTGAATTTGTTAACTGTGGCTAGCACAGGCAATGCTGCTTTTTTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGATATTGGTGACTCAAAAGGGAAAACCCCATTGCACATAGCAGCGTCAAATGGCCATGAAGATTGTGTTAAAGTTTTACTTAAGCATGCATGTAACTTACATTTGAGAGATGTGAATGGTAACACAGCATTATGGGATGCTATATCATCAAAACATTATTCCATATTCAGAATTCTCTATCAGCTTGCTGCTCTCTCCGATCCACACTTGCCGGGTGATCTCTTATGCACAGCAGCAAGAAGAAATGATTTAGCAGTTATGAAGGAACTCTTAAAGCTAGGATTGAATGTTAACTCCAAGGATCACCAAGGAATGTCAGCAATCCAAGTTGCCATGCAAGAAAACCATGTAGACATGGTTGAATTTCTTGTCATGAATGGAGCAGATACCAATGGTGAATGTGCATATACTAATGGATTTTCTGCATTAACCTTAAATGAAATGATGCAAAAACGCGAAGTTGGTCATCAAATCAATGTGAATGAGGCCATATCAAGTGAGTTTGTGTTAGAAAAGAAACACCAAGAAGAACAAAAGAACAAAAGTTCAAATGGATTCAACTACCCAAGAATAAGCATATATAGAGGTCACCCTATACACGGAAGAGGAAAAGGTTCCATGGAACCTGGGAAGTTAATAAGGTTACCTGATTCACTAGAGGATCTGAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGCAGTGGTAACAGATGAAGAAGGAGCAGAGATAGATTGTATTGATGTAATCAGAGATAATGATAAAATTTTTGTTATTATATAA 2394 0.4023 MSFNLRNVSKLILPPLGVSSNKYEQNPVDSRGWIISPMDSRYRWWESLMVILVAYSAWVYPFEVAFMHSSPPQYRTRIYIVDTLVDLFFAVDIVLTFFLAYIDRTTHLLVQDSSKILLRYLSTWFLMDVASTIPYEALSCLFTGKHYVSLPYYLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWIRCARLLSVMVFSVHCGGCLYYMVADRYPHKGKTWIGAVNPNFRETNLWIRYISAMYWSITTMSTVGYGDLHAVNTFEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIESASNFVSRNRLPPRLKEQILAYMCLRFKAESLNQHHLIEQLPKSICQSICQHLFYETAEKAYLFKGVSKEILLSLVTKMKAEYLPPREDVIMQNEVPDDVYIIVSGEVEFIDCGMEKERVVGTLQTGDMFGEVGALCYRPQRFTFRTKTLTQLLRLKTSTLIETMQVKKEDNIQILKNFLQHFKQLKNLSIKDLMVESVEEEDSDMTVNLLTVASTGNAAFFEELLRAGLDPDIGDSKGKTPLHIAASNGHEDCVKVLLKHACNLHLRDVNGNTALWDAISSKHYSIFRILYQLAALSDPHLPGDLLCTAARRNDLAVMKELLKLGLNVNSKDHQGMSAIQVAMQENHVDMVEFLVMNGADTNGECAYTNGFSALTLNEMMQKREVGHQINVNEAISSEFVLEKKHQEEQKNKSSNGFNYPRISIYRGHPIHGRGKGSMEPGKLIRLPDSLEDLKTIAGEKFGFDAKDAVVTDEEGAEIDCIDVIRDNDKIFVII 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241821g00006 797 Pfam Ion transport protein 42 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc241821g00006 797 PRINTS EAG/ELK/ERG potassium channel family signature 82 92 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241821g00006 797 PRINTS EAG/ELK/ERG potassium channel family signature 93 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241821g00006 797 PRINTS EAG/ELK/ERG potassium channel family signature 279 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241821g00006 797 PRINTS EAG/ELK/ERG potassium channel family signature 235 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241821g00006 797 PRINTS EAG/ELK/ERG potassium channel family signature 261 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241821g00006 797 Pfam Cyclic nucleotide-binding domain 385 468 IPR000595 -
Stsc241821g00006 797 ProSiteProfiles Ankyrin repeat profile. 540 572 IPR002110 GO:0005515
Stsc241821g00006 797 ProSiteProfiles Ankyrin repeat region circular profile. 540 571 - -
Stsc241821g00006 797 SUPERFAMILY cAMP-binding domain-like 292 484 IPR018490 -
Stsc241821g00006 797 ProSiteProfiles KHA domain profile. 724 797 IPR021789 -
Stsc241821g00006 797 ProSiteProfiles cAMP/cGMP binding motif profile. 365 484 IPR000595 -
Stsc241821g00006 797 Gene3D - 43 288 - -
Stsc241821g00006 797 FunFam Potassium channel KAT2 353 489 - -
Stsc241821g00006 797 SUPERFAMILY Ankyrin repeat 472 665 IPR036770 -
Stsc241821g00006 797 Pfam Ankyrin repeats (3 copies) 608 665 IPR002110 GO:0005515
Stsc241821g00006 797 Pfam Ankyrin repeats (3 copies) 516 595 IPR002110 GO:0005515
Stsc241821g00006 797 SUPERFAMILY Voltage-gated potassium channels 37 288 - -
Stsc241821g00006 797 Gene3D Jelly Rolls 332 508 IPR014710 -
Stsc241821g00006 797 SMART ANK_2a 540 569 IPR002110 GO:0005515
Stsc241821g00006 797 SMART ANK_2a 506 536 IPR002110 GO:0005515
Stsc241821g00006 797 SMART ANK_2a 637 666 IPR002110 GO:0005515
Stsc241821g00006 797 SMART ANK_2a 608 633 IPR002110 GO:0005515
Stsc241821g00006 797 SMART ANK_2a 573 604 IPR002110 GO:0005515
Stsc241821g00006 797 Gene3D - 509 691 IPR036770 -
Stsc241821g00006 797 SMART cnmp_10 365 482 IPR000595 -
Stsc241821g00006 797 FunFam Potassium channel KAT3 44 289 - -
Stsc241821g00006 797 Pfam KHA, dimerisation domain of potassium ion channel 724 795 IPR021789 -
Stsc241821g00006 797 CDD CAP_ED 365 478 IPR000595 -
Stsc241821g00006 797 PANTHER POTASSIUM CHANNEL AKT1 6 795 IPR045319 GO:0005249|GO:0006813
Stsc241821g00006 797 ProSiteProfiles Ankyrin repeat region circular profile. 637 665 - -
Stsc241821g00006 797 ProSiteProfiles Ankyrin repeat profile. 637 669 IPR002110 GO:0005515
Stsc241821g00006 797 PRINTS Ankyrin repeat signature 541 556 IPR002110 GO:0005515
Stsc241821g00006 797 PRINTS Ankyrin repeat signature 653 667 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241821g00006 Stsc-Chr241821 38364 43405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241821g00006 2 545 Ion Channels AT4G22200 71.898 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241821g00006 K21867 - gmx:100798422 1269.99