Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241821g00004 ATGAAGAAGATTATGGTAACCATGATGATGGTCATGGTGATGGTGTCTGTAACCATGGCAGCACCTGCACCTGCACCTTCTCCTTCAACATGTCCCATGGACTTGAACTATGTCAAGAGAGTTCCATGGAACTCTTCAGCATGTCAGAACTTCCATTCTTTATCTTCAAAAAACGAAACACACTTCAGCAACTGTTGCACCTCTCTCTTATCTCTATTAGGAATAGGGTTTGCACAGCACCTTAAAGAAACCTCCAATTTCAACCTCCCAAACCTTGAAACCTCAACCTCATGCCTCCATGATTTCCAGTCTCAGTTGAACTTACTCTCTCTCCCAAACAACCTCGTTGACTTGTGCTTTGACCCTCACCAGTTCATCATATCCCCAAACGTTTGTGCAGGGATTCAAACCCTAAAAGATTGGGACAACAAGCTTGGTCAAGTCACTCCTCTTGATGCTAGCTGCAAGCAAGATCTCACTGATTATTCCCTCTGTGATATGTGTCTTTCTGCTGGGTTTCAGGTGAAGCAGAAGCTTATCTCCATTGATGGTAATGCTTCTCACTCTGAAGATTGTTTCCACTTTACTATTCTGTATGCTGCTGCAATTGTGAATCAGTATGGACCTGAGAGCAATGGTGCCATGAGTTGCATATTTGGTATGTCAATTTACTCTCAGGGTGGTGGCTCTGGTGGGAAATCACACCAGGGTTTGATTTTTGGGTTAACTGGTGCTGGTGTTGCTTTGTTTGTTATGCTTTGTTTGTTAGGGGTTTATGCTTGGTATGATAGGAAGGTTAGGAGGAAGAAGCTTGAGGATCTTGAATTCGATGTTGATCCTGAGGAACAAGGGTCTAAGCGTAGGTTGAGGCCGAATACAGGCTCAATTTGGTTCAAGATTGATGAGCTTGAGAAGGCTACTGATAATTTCTCAACCAAGAATTTCATTGGGAGGGGTGGGTTTGGGCTTGTTTTCAAGGGGGTTTTGTCGGACAGTTCGGTTGTAGCGGTTAAGAGGGTCTTGGAATCTGATTTTCAAGGGGATGTGGAGTTTTGTAATGAGGTGGAGATTATTAGCAATCTGAAGCACCGGAATCTGGTGCCTCTTCGAGGTTGTTGCGTGGTGGATGATGAGGATGAGAGTTTTAATGACAGGGGAAGCCAGAGGTATCTGGTTTATGATTACATGCCTAATGGAAATCTTGAAGACCATCTGTTTGGTCTCAGTGAGCAGCAAAAGGCGAAGAATTCGCTGACTTGGCCTCAAAGGAAGAGCATAATCTTGGATGTGGCGAAGGGGCTAGCTTATCTGCACTATGGAGTCAAGCCTGCAATTTTTCATAGGGATATCAAAGCAACCAATATATTACTTGATGCAGACATGAGAGCTAGAGTGGCGGATTTCGGGCTTGCTAAACAAAGCAGGGAAGGCCAGTCTCATCTCACTACAAGAGTAGCTGGAACTCATGGATATCTAGCCCCGGAGTATGCGCTTTATGGTCAGCTTACTGAGAAAAGTGATGTGTATAGCTTCGGCGTTGTTGTTTTGGAGATAATGTGTGGGAGGAGAGCTCTTGATTTGTCTTCAGCCGGATCTCTAAAGGCGTTCTTGATCACGGATTGGGCTTGGTCATTGGTTAAATCAGGGAACATAGAAGAGGCATTGGATGCTTCTTTGTTGAAGGATGATAGCTTTGGAAGCTCAAATCCAAAGAGCATAATGGAAAGGTTTTTGCTTGTTGGAATTCTATGCTCTCATGTGATGGTTGCTCTTAGGCCAACAATTTCTGATGCATTGAAGATGTTGGAAGGTGATATTGAGGTTCCTCAGATCCCGGATCGGCCAATGCCGCTCGGACACCCTGCTACGTTTTACAATGACAGTGGCAGCACTTTCAGCATATCTCCGGCGTTAAGTGGCCCCAAGTTGCAAGCTGGAGACATGCTCAGGTCCATTGGTAAGAGCTGA 1968 0.4482 MKKIMVTMMMVMVMVSVTMAAPAPAPSPSTCPMDLNYVKRVPWNSSACQNFHSLSSKNETHFSNCCTSLLSLLGIGFAQHLKETSNFNLPNLETSTSCLHDFQSQLNLLSLPNNLVDLCFDPHQFIISPNVCAGIQTLKDWDNKLGQVTPLDASCKQDLTDYSLCDMCLSAGFQVKQKLISIDGNASHSEDCFHFTILYAAAIVNQYGPESNGAMSCIFGMSIYSQGGGSGGKSHQGLIFGLTGAGVALFVMLCLLGVYAWYDRKVRRKKLEDLEFDVDPEEQGSKRRLRPNTGSIWFKIDELEKATDNFSTKNFIGRGGFGLVFKGVLSDSSVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVVDDEDESFNDRGSQRYLVYDYMPNGNLEDHLFGLSEQQKAKNSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRRALDLSSAGSLKAFLITDWAWSLVKSGNIEEALDASLLKDDSFGSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPATFYNDSGSTFSISPALSGPKLQAGDMLRSIGKS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241821g00004 655 CDD STKc_IRAK 316 604 - -
Stsc241821g00004 655 SUPERFAMILY Protein kinase-like (PK-like) 291 603 IPR011009 -
Stsc241821g00004 655 Gene3D Phosphorylase Kinase; domain 1 279 395 - -
Stsc241821g00004 655 ProSiteProfiles Protein kinase domain profile. 310 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241821g00004 655 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 396 610 - -
Stsc241821g00004 655 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Stsc241821g00004 655 Gene3D Transferase(Phosphotransferase) domain 1 396 610 - -
Stsc241821g00004 655 Pfam Protein kinase domain 311 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241821g00004 655 Pfam SPARK 27 193 IPR043891 -
Stsc241821g00004 655 FunFam probable receptor-like protein kinase At1g11050 271 395 - -
Stsc241821g00004 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc241821g00004 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 622 - -
Stsc241821g00004 655 SMART serkin_6 310 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241821g00004 Stsc-Chr241821 17184 19781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241821g00004 25 650 Receptor kinase-like Gene Family AT1G11050 63.955 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc241821g00004 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241821g00004 - - gmx:100806560 1022.69