Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241821g00003 ATGAAGGAGATGTTGAAGAATAATACTGAAAACAAAAATAATAATAACAACAATAATGAGTGTTCATCAAAAACTCTCATTAATACTTGTCCCAGTCCAAGTAGCAACGAGAGATGCTTTGTAGCCTCTATATGCAGCTTTGGTTCAGATGGCACTGCAAGGGGAATGCTCGGTGGCCGCCGCCGCCGGCGGCGGCTAGAAAGAGGAGTGCTTCTGCAGAGTGATGATCCCAATAGATACTGCACAAATTATTATTGCAGGACAACAAGAACTCCAATGTGGCGCAAGGGCCCTCTCGGATTTAAGGTTACTTTGTGTAATGCATGTGGGATTGATTACATGAAGCAGGTGACAAGCAGAGGGAGTGGGATCACTACTACACTCCCAGATTTTTCTGCAGAATTAGGATCAGATCATTCAAATTCAGAAGGCTCTGCAGATGTTTAA 447 0.434 MKEMLKNNTENKNNNNNNNECSSKTLINTCPSPSSNERCFVASICSFGSDGTARGMLGGRRRRRRLERGVLLQSDDPNRYCTNYYCRTTRTPMWRKGPLGFKVTLCNACGIDYMKQVTSRGSGITTTLPDFSAELGSDHSNSEGSADV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241821g00003 148 SMART GATA_3 75 133 IPR000679 GO:0006355|GO:0043565
Stsc241821g00003 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 73 124 - -
Stsc241821g00003 148 Pfam GATA zinc finger 86 115 IPR000679 GO:0006355|GO:0043565
Stsc241821g00003 148 ProSiteProfiles GATA-type zinc finger domain profile. 86 120 IPR000679 GO:0006355|GO:0043565
Stsc241821g00003 148 PANTHER OS01G0976800 PROTEIN 8 118 - -
Stsc241821g00003 148 Gene3D - 76 122 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241821g00003 Stsc-Chr241821 12679 13201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241821g00003 60 139 C2C2-Gata Transcription Factor Family AT5G66320 38.554 6.40e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc241821g00003 GATA 7.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241821g00003 - - adu:110276499 156.762