Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241819g00007 ATGCGGTGTCGTTTTGGGAGGACAACAACGGCAATGGGAAGACGGAGCGTGCCGTTGTTGAACAATGATGACAATCTCCAATTTACATCAAGCAAGCCAAAGAAACTCAAAGCTGATGAAGCCTATAAGGAGCAGCCACCTGAGATTGTGACGATGACAAATACAGGAAATTTAAGATTTAAAATCAAATATAGCAGGAGACCATTAAAAGAGTCAAAGTTTAAGAAAGGGATAATGGTGGAAGTCAGGGATGAGAATGAAGGTTTTGAGGGTGCTTGGTTCATCGGTACTATTGTTAGCTCAGTAGGTAAAGACAGGTTTCTCATAGAATTTAGGGACCTCATAACAGATGATGGAACTCATCAGCTCTTGAAAGAAGAAGTCCATGAAAATTTTATTAGGCCCTGTCCACCCGAAGTTCCCTCAGTTAGTTCTTTCAAACAGTTTCAAGAGGTTGATGCATGGTATAATGATGCTTGGTGGGAAGGCGTGGTTCTTGAAGTGGTAAATAGCAGAGAGTGTTTAGTTTCTTTCATTCACAAAGATGTATTGAGATTTGAAAATTCCAAGCTAAGGCCTCTTCAGGATTGGTTTGATGGAAAATGGGTCATGGCATCTAAGGAGTCAAGGGAGCTGACAAAGAAGTTTGGAGATGTGATGTCAAAAGCCAAGAGTTTCACTGGAAATAAAATAATCTTGAAATGCCTGAAGTCTCACGAGCCAGAGCCGGAAAAGGTGCCAAGAGTTCTAATGTCGAGTTGTAGAAACACCAGCATCAAATTTGCATCGCATTTATATAAAGGTGCAAAGGTAGAAGTCACAAGTGAAGAAGAAGGTTATCAAGGTGCCTGGTACACAGCCATCGTTGTTAACTCTTTACAGAACGGCAAGTATGTGGTGGAGTATCTCACCCTGAAAACTGACGACTTAACTGAACAACTGAAAGAGGAAGCAGATGCTTCAAATATCAGGCCACTTCCACCAGACATTCAACATCGCCGTCGCTATGCGCTGCGCGAACGGATTGGAATCTTAAATGGTTTTACAAAATCTTTGGTATCAGAAGTTGATGCTGTTATGGTTCAACAAATATTGAGACGAATTTTCTACTACCCTGTGGAATATTTGGATATGTTGGAATTACCTATACCACCCTGGTGCTAA 1164 0.4124 MRCRFGRTTTAMGRRSVPLLNNDDNLQFTSSKPKKLKADEAYKEQPPEIVTMTNTGNLRFKIKYSRRPLKESKFKKGIMVEVRDENEGFEGAWFIGTIVSSVGKDRFLIEFRDLITDDGTHQLLKEEVHENFIRPCPPEVPSVSSFKQFQEVDAWYNDAWWEGVVLEVVNSRECLVSFIHKDVLRFENSKLRPLQDWFDGKWVMASKESRELTKKFGDVMSKAKSFTGNKIILKCLKSHEPEPEKVPRVLMSSCRNTSIKFASHLYKGAKVEVTSEEEGYQGAWYTAIVVNSLQNGKYVVEYLTLKTDDLTEQLKEEADASNIRPLPPDIQHRRRYALRERIGILNGFTKSLVSEVDAVMVQQILRRIFYYPVEYLDMLELPIPPWC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241819g00007 387 SMART agenet_At_2 144 199 IPR014002 -
Stsc241819g00007 387 SMART agenet_At_2 72 141 IPR014002 -
Stsc241819g00007 387 SMART agenet_At_2 263 331 IPR014002 -
Stsc241819g00007 387 CDD Tudor_Agenet_AtDUF_rpt1_3 267 328 - -
Stsc241819g00007 387 CDD Tudor_Agenet_AtDUF_rpt2_4 150 193 - -
Stsc241819g00007 387 Pfam Agenet domain 268 328 IPR008395 -
Stsc241819g00007 387 Pfam Agenet domain 79 138 IPR008395 -
Stsc241819g00007 387 CDD Tudor_Agenet_AtDUF_rpt1_3 74 138 - -
Stsc241819g00007 387 Gene3D - 256 334 - -
Stsc241819g00007 387 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 265 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241819g00007 Stsc-Chr241819 65716 68871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241819g00007 83 197 PHD Transcription Factor Family AT5G58610 28.889 1.29e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241819g00007 - - adu:107483399 556.599