Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241817g00013 ATGACGGAGCCCACCTTCTTCTTTATCTCCATTGCTATTTCCATCAGCTTCTGCTTCATCATTCAAACCCATGTCTTAGCTTCTTCTAACTCTAACAATAATCCATTCCCCAAAGAAGCTCACCCCACAAAAACTGGTTACCTTCCAGTAAGTACCACTTCTTCCTCTGCAATGTTCTATTATTTCTATGAAGCTCAGAACTCAACCTTACCTCTCTCTCAAACCCCACTTCTCATTTGGCTCCAAGGTGGACCTGGCACCTCCTCCATGCTCGGCAACCTCTATGAGGTTGGACCATGGACTTTCTCTGAAAAGTCCTTCACTTTTCGACCCAACTCCGGTGCATGGAACAGACTCTTTGGCCTTCTTTTTCTCGACAACCCCATTGGTACTGGATTTAGTGTTGCTGCATCACAAAACGAAATCCCAACAGATCAAAATGGTGTTGCCAAACACCTCTTTGCTGCCATAACAACGTTTCTTAAGCTTCACCCTGAATTCAAACATCGCCCCATTTACATTTCTGGAGAAAGCTATGGTGGAAAGTATATCGTCTCAATTGGGTACTATATATTGAAGGAGAATGAAGGGTTGAGTGATTCTGGAAGAGTGAATTTGGTTGGTGTTACCATTGGTAATGGGGCAACAGATCCGGAGACACAAACACTTACTCATGCTATCACTGCTTATCATGCTGGTTTGATCAATGATAAGCAGAAGGAGGAGTTGGAGAAGATTCAGATGGAAGCAGTTACTTTGGCACAGAATTTGAAATGGAGTGAAGCGGCAGATGCACAGACCAAAGCATTGACGAATCTGCAAGAAATGACAGGGTTGGCTACTTGCTATGATTACACAAGGAAAGATCATCCTTATCATTACAAAGATTGGATGACTGAGTTGTTGAACATGGCTGAGGTGAAGAAGACACTGGGAGTGAACGAATCTCTTGTCTGGGTGTACCATAACAGTGATGTTAGAGCTGCAATGTATGCTGATTTGATGAAGAGTGTGAAGTTCAAGGTGGAAGAGTTGTTGAGGAGCAACAGTATTAGGGTGTTGTTGTACCAAGGTCAATGGGATTTGCTTGATGGTCCTGTGCAAGTTGAGGCATGGGTGAAGACTATGGAATGGGAAGGGATTGTGGAATATCTGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGTTTGCTGGGTATGTCCAACAATGGAAGTCACTCACCAATGTTGTTGTCTTGGGTGGTGGCCATTTTCTTCCTGCTGACCAGCCTATCAATGCTCAAGCTATGATCGAAGACTGGATATTTCAAAGGGGTATTTTTGGAAATTCATCTTCTTTTGGTTTTATGTGA 1356 0.4329 MTEPTFFFISIAISISFCFIIQTHVLASSNSNNNPFPKEAHPTKTGYLPVSTTSSSAMFYYFYEAQNSTLPLSQTPLLIWLQGGPGTSSMLGNLYEVGPWTFSEKSFTFRPNSGAWNRLFGLLFLDNPIGTGFSVAASQNEIPTDQNGVAKHLFAAITTFLKLHPEFKHRPIYISGESYGGKYIVSIGYYILKENEGLSDSGRVNLVGVTIGNGATDPETQTLTHAITAYHAGLINDKQKEELEKIQMEAVTLAQNLKWSEAADAQTKALTNLQEMTGLATCYDYTRKDHPYHYKDWMTELLNMAEVKKTLGVNESLVWVYHNSDVRAAMYADLMKSVKFKVEELLRSNSIRVLLYQGQWDLLDGPVQVEAWVKTMEWEGIVEYLNAERKIWKVNGEFAGYVQQWKSLTNVVVLGGGHFLPADQPINAQAMIEDWIFQRGIFGNSSSFGFM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241817g00013 451 Gene3D alpha/beta hydrolase 19 444 IPR029058 -
Stsc241817g00013 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 408 421 IPR001563 GO:0004185|GO:0006508
Stsc241817g00013 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Stsc241817g00013 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Stsc241817g00013 451 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Stsc241817g00013 451 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 425 IPR001563 GO:0004185|GO:0006508
Stsc241817g00013 451 Coils Coil 236 256 - -
Stsc241817g00013 451 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Stsc241817g00013 451 SUPERFAMILY alpha/beta-Hydrolases 42 438 IPR029058 -
Stsc241817g00013 451 Pfam Serine carboxypeptidase 42 437 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241817g00013 Stsc-Chr241817 71827 73182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241817g00013 303 436 Calmodulin-binding Proteins AT2G22960 23.358 6.34e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241817g00013 K09645 - gmx:100780822 575.474