Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241817g00002 ATGTTCTATGCTTTCTATGAAGCTCAGAACTCAACCTTACCTCTCTCCGAAACCCCACTTGTCATTTGGCTCCATGGTGGCCCTGGAAGTTCCGCCATGGTTGGCAACTTCTATGAGGTTGGACCATGGCGTATCACAGAATCCATCACCCTTGAACCCAACCCTGGTTCTTGGAACAACTACTTTGGCCTTCTCTTTCCAGATAACCCCATTGGCACTGGATTCAGTATAGCCTCATCACCACAAGAAATCCCGACAGATCAACAAGGTATTAGCAGACACCTTTTTACTGCTATTGCACAGTTTCTTCAACTTGATCCTGTTTTCAAACACCGTCCTATTTATTTTAATGGGGAAAGCTATGGTGGAAAGTATGCCTCTACAATTACAAATTTTATATTGAAAAGAAATGCAGAGTTGCATCCTTCTCAAAGAATGAATTTGGTTGGTGTGGTTATTGGGGATGGGATAATTGAGGCTGTGACTCAAGCAGGCACGGAACCTGCTAATGCTTATTACGTGGGTTTGATCAATGAGAAGCAAAAGAGTGAGTTGGAGAAAGATCAATTGGAGGTAGTTAGGTTGACGCAGATTCAGAATTGGAGTGAAGCAGCGAGTGAATGGAGAAGAGTCCAGGACAAGATTCAAAACATGTCAGGGTTGACTTCTTTGTTTGACTACACAAGGAAAGATCATCCTTATCACTATCAAGATTGGATTACTCAATTCTTGAACATGGCTGAGGTGAAGAAGGCACTGGGAGTGAACGAATCTCAAGTGTTTGAAACTAGCAGCATTGAGGTAAGGACAGCGTTGGAGGGTGATATAATGAAGAGTGTCAAGTTTAGGGTAGAGGAGTTGTTGAGGATCAACACTATTAGGGTGTTGTTGTACCAAGGCCAATATGATTTGCTTGCTGGTCCAGTGCAAACTGAGGCGTGGGTGAAGACTCTGAAATGGGAAGGGATTCAGGATTATCTAAATGCAGAGAGGAAGATATGGAAGGTTAATGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACCAATGTTGTGGTGTTAGGAGCTGGCCATCTTATGCCTGCTGACCAGCCTGTCAATGCTCAAGCAATGATGCAAGATTGGATCTTGCAAAGGGGTATCTTTGGAAATTCGCCTTCTTTCAATTACATTTGA 1182 0.434 MFYAFYEAQNSTLPLSETPLVIWLHGGPGSSAMVGNFYEVGPWRITESITLEPNPGSWNNYFGLLFPDNPIGTGFSIASSPQEIPTDQQGISRHLFTAIAQFLQLDPVFKHRPIYFNGESYGGKYASTITNFILKRNAELHPSQRMNLVGVVIGDGIIEAVTQAGTEPANAYYVGLINEKQKSELEKDQLEVVRLTQIQNWSEAASEWRRVQDKIQNMSGLTSLFDYTRKDHPYHYQDWITQFLNMAEVKKALGVNESQVFETSSIEVRTALEGDIMKSVKFRVEELLRINTIRVLLYQGQYDLLAGPVQTEAWVKTLKWEGIQDYLNAERKIWKVNGELAGYVQQWKSLTNVVVLGAGHLMPADQPVNAQAMMQDWILQRGIFGNSPSFNYI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241817g00002 393 Pfam Serine carboxypeptidase 1 379 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 Gene3D alpha/beta hydrolase 1 384 IPR029058 -
Stsc241817g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 350 363 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 54 66 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 67 77 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 127 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 367 IPR001563 GO:0004185|GO:0006508
Stsc241817g00002 393 SUPERFAMILY alpha/beta-Hydrolases 1 379 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241817g00002 Stsc-Chr241817 5155 6336 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241817g00002 245 378 Calmodulin-binding Proteins AT2G22960 25.926 2.54e-10 57.8