Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241816g00008 ATGAAGAAGAACATGCATTGGTTGAAGCAAATAGGGAACGGCAATGGCGGAATGATGAGGTCAGGGAGGAGGCTGTCGCTTGGGGAATACAAGAGGGCGGTGTCATGGTCGAAGTACCTGGTGTCGCCGGGTGCCGCCATTAAAGGAGAAGGTGAAGAAGAATGGAGTGCTGACATGTCACAGCTTCTCATTGGTGCTAAGTTCGCCACTGGAAGGCATAGCAGGATCTACAGAGGCGTATACAAGCAGAAAGATGTGGCGATCAAGCTTGTTAGCCTTCCTGAAGAGGATGAGGATCTTGCTACTTTTCTTGAGAAGCAATTCACTTCTGAAGTCTCCTTGCTTCTCCGCTTGCGCCATCCCAACATCCTCACTTTTATTGCAGCCTGCAAGAAACCTCCTGTCTTTTGTATAATTACTGAATACTTAGCGGGTGGATCATTGAGAAAATATTTGCATCAGCAACAACCGAATTCAGTTCCGCTAGAAATTGTTCTGAAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTCACTCTCAAGGGATACTTCACAGAGATCTCAAGTCAGAAAATCTGCTTTTGGGAGAGGATATGTGTGTAAAAGTAGCAGATTTTGGTATCTCTTGCTTGGAATCTCAGTGTGGTAGCGCCAAAGGATTCACCGGAACTTATCGGTGGATGGCTCCGGAAATGATCAAAGAAAAGCATCACACTAAGAAAGTAGATGTCTATAGTTTCGGCATAGTTCTATGGGAGATTTTAACAGGACAGACACCATTTGAGAACATGACACCAGAGCAGGCTGCATTCGCAGTTTCCCACAAGAATGCAAGGCCACCATTGCCATCTTCATGTCCATGGGCACTAAGTGACCTAATAAATAGATGCTGGTCAAGCAATGCAGACAAGAGGCCACATTTTGATGAGATAGTTACCATCTTGGAGAACTACACAGAATCATTGCAACAGGATCCTGAGTTCTTCACAACATACAAACCACGCCCTGCTAATAACACAACAATTCTTGGATGCTTACCCAAGTGCAATATTCGCCATAAATCTACTGCTTGCAAAGCTTAA 1086 0.4466 MKKNMHWLKQIGNGNGGMMRSGRRLSLGEYKRAVSWSKYLVSPGAAIKGEGEEEWSADMSQLLIGAKFATGRHSRIYRGVYKQKDVAIKLVSLPEEDEDLATFLEKQFTSEVSLLLRLRHPNILTFIAACKKPPVFCIITEYLAGGSLRKYLHQQQPNSVPLEIVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWEILTGQTPFENMTPEQAAFAVSHKNARPPLPSSCPWALSDLINRCWSSNADKRPHFDEIVTILENYTESLQQDPEFFTTYKPRPANNTTILGCLPKCNIRHKSTACKA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241816g00008 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Stsc241816g00008 361 CDD STKc_MAP3K-like 71 316 - -
Stsc241816g00008 361 SUPERFAMILY Protein kinase-like (PK-like) 51 316 IPR011009 -
Stsc241816g00008 361 Gene3D Phosphorylase Kinase; domain 1 51 143 - -
Stsc241816g00008 361 Gene3D Transferase(Phosphotransferase) domain 1 145 342 - -
Stsc241816g00008 361 Pfam Protein tyrosine and serine/threonine kinase 65 316 IPR001245 GO:0004672|GO:0006468
Stsc241816g00008 361 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 320 - -
Stsc241816g00008 361 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241816g00008 361 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241816g00008 361 FunFam Serine/threonine-protein kinase isoform 1 52 144 - -
Stsc241816g00008 361 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Stsc241816g00008 361 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Stsc241816g00008 361 PRINTS Tyrosine kinase catalytic domain signature 178 196 IPR001245 GO:0004672|GO:0006468
Stsc241816g00008 361 PRINTS Tyrosine kinase catalytic domain signature 224 234 IPR001245 GO:0004672|GO:0006468
Stsc241816g00008 361 PRINTS Tyrosine kinase catalytic domain signature 140 153 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241816g00008 Stsc-Chr241816 46890 51785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241816g00008 35 325 MAP Kinase Kinase Kinase AT1G62400 64.068 3.23e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc241816g00008 PK_Tyr_Ser-Thr 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241816g00008 - - gmx:100807757 642.884