Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241815g00010 ATGGAGCACATGATGGGTCTGCTGAGAATTCATGTCCAAAAAGGAGTGAACCTTGCTGTAAGGGATGTAGTGAGCAGTGACCCTTATGTCATCATCAGAATGGGCAAGCAGAAGGTGAAGACTAGGGTGGTGAAGAAGAATATCAACCCTGAATGGAATGATGATCTGACTTTGTCCGTTTCAGATCCTAGTCTCCCAGTGCACCTATTTGTGCATGACAAGGACACATTCAGCCTTGATGACAAAATGGGGGATGCTGAGTTTGAGATCGGCCCGTTCGTGGAAGCGGTGAAGATGCAGCTGCAAGGTGTCCGGGACGGCACCATAGTTACAAGGGTGCAGCCTAGCAGAGAGAATTGCTTGGCAGAGGAGAGTCACATTGTGTGGAGAGATGGGAAAGTGGTGCAGAACATGGTTCTTAGGCTAAGAAATGTGGAGTCTGGTGAAGTGGAGCTACAACTCCATTGGATTGACATTCCTGGTTCCAAGGGTCTTTAA 498 0.4819 MEHMMGLLRIHVQKGVNLAVRDVVSSDPYVIIRMGKQKVKTRVVKKNINPEWNDDLTLSVSDPSLPVHLFVHDKDTFSLDDKMGDAEFEIGPFVEAVKMQLQGVRDGTIVTRVQPSRENCLAEESHIVWRDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241815g00010 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Stsc241815g00010 165 CDD C2_ArfGAP 6 148 - -
Stsc241815g00010 165 SMART C2_3c 7 102 IPR000008 -
Stsc241815g00010 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Stsc241815g00010 165 Pfam C2 domain 6 92 IPR000008 -
Stsc241815g00010 165 Gene3D C2 domain 3 161 IPR035892 -
Stsc241815g00010 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241815g00010 Stsc-Chr241815 56129 57602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241815g00010 38 165 C2H2 Transcription Factor Family AT1G70790 56.923 1.01e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241815g00010 - - cave:132181516 283.878